Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq20339 259 1e-64 seq12053 118 3e-22 seq7295 109 2e-19 seq24164 105 2e-18 seq8506 98.7 3e-16 seq22815 95.1 4e-15 seq2793 87.8 5e-13 >seq20339 Length=39107 Score = 259 bits (286), Expect = 1e-64 Identities = 621/936 (66%), Gaps = 44/936 (5%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| | |||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 2330 AGCAGATAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2271 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||| | ||| || | | || |||| | |||| | Sbjct 2270 GTTAGCACAGATAATTATATAACCCT----------GACTGT-----------CAACTGC 2232 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || | || || ||||||||||||||| || || | || ||| Sbjct 2231 AGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGGGT 2172 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA----T 36204 || | | || || || ||||||||| | |||| ||||||||| || || | Sbjct 2171 AAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTAA----CGAATAAGAGT 2116 Query 36205 TATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGT 36264 | || || |||||||| |||||||| || ||||| || ||||||| | || | | Sbjct 2115 TGTTGAAACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTAT 2056 Query 36265 TATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTG 36324 |||| || ||||| ||||| || ||| | || || | || ||||||| | | | Sbjct 2055 TATAAGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGG 1996 Query 36325 TTTCACGAAT--AAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCT 36380 ||| | || || | || ||| || | || | | ||||| | ||||| | Sbjct 1995 GTTCCCTGATCGAACT-AG--AGTTACCATTGAAATA--TTCATAGAACTGAATAGGGAG 1941 Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || ||||||||||| |||| || | || || || | ||||||||||| |||||||| Sbjct 1940 CCGCCGAATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCA 1881 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 || || | || ||| ||||||||||| | | | || |||||||||| || | | Sbjct 1880 TCCAAGAATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAA 1821 Query 36501 AAA-CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||| || ||||| || | |||| || |||||| | || | | ||||||| || | Sbjct 1820 AAAACTTCCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGT 1761 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||| | || ||| ||| | || | |||| || ||||||| ||||| | || Sbjct 1760 TGAACATGCAACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACG 1701 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| |||| || | |||| | ||||| | | ||| |||| ||| || | || Sbjct 1700 ACCCATGTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACC 1641 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 || |||||||| || || | || ||| |||||||||||||||| || || | ||| || Sbjct 1640 ATTGTATAACCATTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTAAACCTAT 1581 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || | || | || | | ||| | || |||||||||||||| || | | | Sbjct 1580 TGTGGCAGAAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCT 1526 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 ||| | || ||| |||||||||| || || || ||||| ||||||| || ||||| Sbjct 1525 TGAAAAAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAATAGT 1466 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCAT 36895 |||| | | ||| || || | || | ||||||| Sbjct 1465 AAATACAATAGTTGCCGTAAATAATGTACGGATCAT 1430 >seq12053 Length=52445 Score = 118 bits (130), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 ||| |||| || || |||||||| || || ||||| ||||||||||||||||| || | | Sbjct 51258 GCTCCTAG-TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGG 51316 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACT 36089 | ||| |||| | || ||||||||||| | || | || | ||||| || Sbjct 51317 TTAGCAYGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACA 51376 Query 36090 GACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTA 36149 || || ||||| | || || || || || |||||||||||| || || | |||| || Sbjct 51377 GATTGGTTGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATA 51436 Query 36150 AGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA 36193 | ||| || | || ||||||||||| |||||||| ||||| Sbjct 51437 AACCAGATACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 51480 >seq7295 Length=63598 Score = 109 bits (120), Expect = 2e-19 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| || ||||| | || ||||| || ||||||| || ||||| Sbjct 44106 TTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAATA 44047 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||||||||| | ||| | || || | || ||||||| || Sbjct 44046 TTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTGTG 43987 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTC 36381 |||| | ||||| ||||| || | || || ||||||||| ||||| | || Sbjct 43986 CTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTA--TGCATAGCACTGAATAGGGATC 43929 Query 36382 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 36441 |||| ||| || || | || | || || || || ||||||||||| ||||| || | Sbjct 43928 CACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 43869 Query 36442 CCTGAAAGACAAACATAAAATTGAAAGTCCC 36472 ||||||| | || || ||||| ||||| || Sbjct 43868 CCTGAAATAAAATCAGGAAATTCAAAGTACC 43838 Score = 100 bits (110), Expect = 9e-17 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || ||||||| || | ||| Sbjct 11284 TTTTTGAAACTAGCATATTGGAAGATCAATCGTCCAAAATAAGCATGAGCGGCTATAATA 11225 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||| ||||| | ||| | || || | || ||||||| | || Sbjct 11224 TTCTAAGTTTCTTCCTCTTGAACAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 11165 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTC 36381 |||| | ||| | ||||| || | || || ||||||| | |||| | || Sbjct 11164 CTTTCCCTAATCAAACTAGAAGTTACCAAGGAATTA--TGCATAGAACTTAATAGGGATC 11107 Query 36382 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 36441 ||| ||| || | | || | ||||| || || ||||||||||| ||||| || | Sbjct 11106 AACCTTTTACACCAGTTAGGCCTATGATATGAAATGGGTGCATAAGGATGTTGTGCTCAG 11047 Query 36442 CCTGAAAGACAAACATAAAATTGAAAGT 36469 | ||||| |||| ||| ||||||||||| Sbjct 11046 CTTGAAATACAATCATGAAATTGAAAGT 11019 >seq24164 Length=10202 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 36365 AGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCAT 36424 |||| ||||| | || |||||||||| | ||| | | |||||| || ||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 36425 AAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAG 36484 |||||| |||||||| ||||| || | || ||| ||||||||||| || || | || || Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 36485 AGGCATACCATCAGAGAAACTCCCTT 36510 ||||||| ||||||| ||||| |||| Sbjct 3471 AGGCATAGCATCAGAAAAACTTCCTT 3446 >seq8506 Length=47589 Score = 98.7 bits (108), Expect = 3e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 36414 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 36473 || || ||||||||||| |||||||| || || || |||| ||| ||||||||||| || Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 36474 GAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || || || ||||||||||||||||| ||||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAACT 40171 >seq22815 Length=10841 Score = 95.1 bits (104), Expect = 4e-15 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || |||| || |||| || || || || Sbjct 8981 TTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACGATA 8922 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||| ||||| |||||| | || || | || ||||||| |||| Sbjct 8921 TTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 8862 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 |||| | || | | ||||| || | | ||||||||| ||||| | || Sbjct 8861 CTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCG 8802 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 || ||| || || | || | || || || || ||||||||||| ||||| || || Sbjct 8801 CCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCATCC 8742 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCC 36472 || || |||| || | ||||||||| || Sbjct 8741 TGGAATACAATAATGACATTGAAAGTACC 8713 >seq2793 Length=100609 Score = 87.8 bits (96), Expect = 5e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || |||| ||||||||||||||||| || | Sbjct 12633 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCAWTACGTTCATGCATAACTTCCATACCAAG 12574 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | |||||| | ||| ||||||||||| Sbjct 12573 GTTAGAACGGTTGATAATATCAGCCCAAGT 12544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150371153016276