Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq20339 280 4e-71 seq12053 154 4e-33 seq94 122 3e-23 seq22815 109 2e-19 seq24164 107 6e-19 seq8506 98.7 3e-16 seq2793 95.1 4e-15 >seq20339 Length=39107 Score = 280 bits (310), Expect = 4e-71 Identities = 637/951 (67%), Gaps = 44/951 (5%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| | ||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 2330 AGCAGATAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2271 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||| | | | | || || | || ||||| | Sbjct 2270 GTTAGCACAGATAATTATATAACCCTGACTG---------------------TCAACTGC 2232 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || | || || ||||||||||||||| ||| || | || ||| Sbjct 2231 AGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGGGT 2172 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA--ACTACGGCTATTG 5428 || | | || || || || ||||||| | | |||| ||||||||| | || | | || Sbjct 2171 AAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTAACGAATAAGAGT--TG 2114 Query 5429 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTA 5488 || || |||||||| |||||||| || ||||| || ||||||| | || | ||| Sbjct 2113 TTGAAACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATTA 2054 Query 5489 TACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTT 5548 || |||||||||||||| || ||| | || || | || ||| | | | | | Sbjct 2053 TAAGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGGT 1994 Query 5549 TCACGAATGAGCGAAGAAG---TAACAA-GACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 || | ||| |||| || || || || | || ||||| | ||| | | || Sbjct 1993 TCCC---TGATCGAACTAGAGTTACCATTGAAAT--ATTCATAGAACTGAATAGGGAGCC 1939 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||||||| |||| || | || ||| || | ||||||||||| |||||||| | Sbjct 1938 GCCGAATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATC 1879 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCA-TCACTGA 5723 | ||||| | ||| || || ||||||| || || || |||||||||| | | | | Sbjct 1878 CAAGAATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAA 1819 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTG 5783 ||||||| || || | |||| | ||| || | || | | || |||| || | || Sbjct 1818 AACTTCCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTTG 1759 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 || |||| || |||| | ||| || | || | | ||||||| ||||| | || | Sbjct 1758 AACATGCAACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGAC 1699 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| |||| | | |||| | |||||| | | | |||| || || | |||| Sbjct 1698 CCATGTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCAT 1639 Query 5904 TGTAAAGCCATTCATCGA-GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 |||| | ||||||||| | | || || |||||||||| || || || ||||| || ||| Sbjct 1638 TGTATAACCATTCATCAACGGATGCCT-CTTCCCAGATTGGGTAAAAATGTAAACCTATT 1580 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 | | || | || | || || | || |||||||||||||| || | ||| | | Sbjct 1579 GTGGCAGAAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCTT 1525 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATA-T 6081 | | | |||| | || || || ||||| ||||| || ||||| | ||| || |||| | Sbjct 1524 GAAAAAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGC-AATAGT 1466 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCA 6132 |||| || ||||||| || || | || | ||||| || |||| ||| || Sbjct 1465 AAATACAATAGTTGCCGTAAATAATGTACGGATCATCAAAACACTAAAGCA 1415 >seq12053 Length=52445 Score = 154 bits (170), Expect = 4e-33 Identities = 169/224 (75%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 ||| |||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||| Sbjct 51258 GCTCCTAG-TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGG 51316 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || ||| |||| | || ||| ||||||||| || | | ||| | |||||| || Sbjct 51317 TTAGCAYGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACA 51376 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| | || || || || || |||||||||||| ||| || | || | || Sbjct 51377 GATTGGTTGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATA 51436 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA 5415 | ||| || | || || ||||||| ||| |||||||| ||||| Sbjct 51437 AACCAGATACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 51480 >seq94 Length=189492 Score = 122 bits (134), Expect = 3e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 5225 CGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGA 5284 ||||| ||||| ||||||||||||||||| |||||||| | || ||| ||||||||| | Sbjct 88021 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTA 88080 Query 5285 ACGA--TTCTACCG-CTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTA 5341 | | | || | ||| ||||| || || || ||||| || || || || || || Sbjct 88081 ATTACATGACACTGACTA---TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 88137 Query 5342 AAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCC 5401 |||||||||||| ||| || | || ||||| ||| || | || || ||||||| ||| Sbjct 88138 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 88197 Query 5402 AGGAAGAAATGTAA 5415 ||||||| ||||| Sbjct 88198 CGGAAGAAGTGTAA 88211 Score = 116 bits (128), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 5225 CGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGA 5284 ||||| ||||| ||||| ||||||||||| |||||||| | || ||| ||||||||| | Sbjct 81492 CGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTA 81551 Query 5285 ACGA--TTCTACCG-CTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTA 5341 | | | || | ||| ||||| || || || ||||| || || || || || || Sbjct 81552 ATTACATGACACTGACTA---TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 81608 Query 5342 AAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCC 5401 |||||||||||| ||| || | || ||||| ||| || | || || ||||||| ||| Sbjct 81609 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 81668 Query 5402 AGGAAGAAATGTAA 5415 ||||||| ||||| Sbjct 81669 CGGAAGAAGTGTAA 81682 >seq22815 Length=10841 Score = 109 bits (120), Expect = 2e-19 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || |||| || |||| || || || || Sbjct 8981 TTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACGATA 8922 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 || || |||||||||||||| |||||| | || || | || ||| | |||| Sbjct 8921 TTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 8862 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 |||| | || | ||||||| || | ||||||||||| ||| | | || Sbjct 8861 CTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCG 8802 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 || ||| ||||| | || | ||||| || || ||||||||||| ||||| || || Sbjct 8801 CCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCATCC 8742 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACC 5694 |||||||| | || | || |||||||| Sbjct 8741 TGGAATACAATAATGACATTGAAAGTACC 8713 >seq24164 Length=10202 Score = 107 bits (118), Expect = 6e-19 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||||| || ||| | | ||| || || ||||||||||| |||||||| Sbjct 3575 CCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCATAAGGATGTTGTGTTCA 3516 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 |||||||||| | ||| || || ||||||||||||| || ||||||||| ||||| Sbjct 3515 GCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAGAGGCATAGCATCAGAA 3456 Query 5723 AAACTTCCCTGTCCGAAAGGGT 5744 |||||||| | |||| |||| Sbjct 3455 AAACTTCCTTAACCGATTGGGT 3434 >seq8506 Length=47589 Score = 98.7 bits (108), Expect = 3e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || || ||||||||||| |||||||| || |||||||| | ||| || || ||||||||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACT 5727 ||||| || ||||||||||||||| ||||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAACT 40171 >seq2793 Length=100609 Score = 95.1 bits (104), Expect = 4e-15 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||| | ||||| ||||| |||||||||||||| Sbjct 12633 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCAWTACGTTCATGCATAACTTCCATACCAAG 12574 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTG 5281 ||| | |||||| | | ||| ||||||||| Sbjct 12573 GTTAGAACGGTTGATAATATCAGCCCAAGTG 12543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152565138403884