Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq20339 255 2e-63 seq12053 123 8e-24 seq7295 109 2e-19 seq24164 105 2e-18 seq8506 98.7 3e-16 seq22815 95.1 4e-15 seq2793 86.0 2e-12 >seq20339 Length=39107 Score = 255 bits (282), Expect = 2e-63 Identities = 622/937 (66%), Gaps = 43/937 (5%) Strand=Plus/Minus Query 25446 AGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCC 25505 ||||||| | ||| ||||||||||| || || ||||| ||||||||||||||||| || Sbjct 2330 AGCAGAT---AGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 2274 Query 25506 TAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAAC 25565 | || |||| | ||| || | | || |||| | |||| Sbjct 2273 AAGGTTAGCACAGATAATTATATAACCCT----------GACTGT-----------CAAC 2235 Query 25566 GACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGC 25625 | || || ||||| || || | || || ||||||||||||||| || || | || Sbjct 2234 TGCAGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGG 2175 Query 25626 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA--ACTACGGCTA 25683 ||||| | | || || || ||||||||| | |||| ||||||||| | || | | Sbjct 2174 GGTAAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTAACGAATAAGAGT- 2116 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 | || || |||||||| |||||||| || ||||| || ||||||| | || | Sbjct 2115 -TGTTGAAACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTA 2057 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| || ||| | || || | || ||||||| | | Sbjct 2056 TTATAAGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATG 1997 Query 25804 GTTTCACGAAT--AAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGC 25859 | ||| | || || | || ||| || | || | | ||||| | ||||| | Sbjct 1996 GGTTCCCTGATCGAACT-AG--AGTTACCATTGAAATA--TTCATAGAACTGAATAGGGA 1942 Query 25860 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919 || ||||||||||| |||| || | || || || | ||||||||||| |||||||| Sbjct 1941 GCCGCCGAATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTC 1882 Query 25920 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCA-TCAG 25978 || || | || ||| ||||||||||| | | | || |||||||||| | | | Sbjct 1881 ATCCAAGAATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAA 1822 Query 25979 AGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGG 26038 | ||||| ||||| || | |||| || |||||| | || | | ||||||| || | Sbjct 1821 AAAAACTTCCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAG 1762 Query 26039 CTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTC 26098 |||| | || ||| ||| | || | | || || ||||||| ||||| | | Sbjct 1761 TTGAACATGCAACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCAC 1702 Query 26099 GTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCAC 26158 | |||| |||| || | || | | ||||| | | ||| |||| ||| || | || Sbjct 1701 GACCCATGTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAAC 1642 Query 26159 CGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 26218 | || || ||||| || || | || ||| |||||||||||||||| || || | ||| | Sbjct 1641 CATTGTATAACCATTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTAAACCTA 1582 Query 26219 TTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTC 26278 ||| | ||| | || | | ||| | || |||||||||||||| || | | | Sbjct 1581 TTGTGGCAGAAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACC 1527 Query 26279 CTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTA 26338 ||| | || ||| |||||||||| || || || ||||| ||||||| || ||||| Sbjct 1526 TTGAAAAAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAATAG 1467 Query 26339 AAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCAT 26375 |||| | | ||| || || | || | ||||||| Sbjct 1466 TAAATACAATAGTTGCCGTAAATAATGTACGGATCAT 1430 >seq12053 Length=52445 Score = 123 bits (136), Expect = 8e-24 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25457 AGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCAC 25516 |||| ||||||||||| || || ||||| ||||||||||||||||| || | || ||| Sbjct 51264 AGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAY 51323 Query 25517 GGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGAT 25576 |||| | || ||||||||||| | || | || | ||||| || || || | Sbjct 51324 GGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGT 51383 Query 25577 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 25636 |||| | || || || || || |||||||||||| || || | |||| ||| ||| | Sbjct 51384 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAGA 51443 Query 25637 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAA 25673 | | || ||||||||||| |||||||| ||||| Sbjct 51444 TACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAA 51480 >seq7295 Length=63598 Score = 109 bits (120), Expect = 2e-19 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| || ||||| | || ||||| || ||||||| || ||||| Sbjct 44106 TTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAATA 44047 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||||||||| | ||| | || || | || ||||||| || Sbjct 44046 TTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTGTG 43987 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTC 25861 |||| | ||||| ||||| || | || || ||||||||| ||||| | || Sbjct 43986 CTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTA--TGCATAGCACTGAATAGGGATC 43929 Query 25862 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 25921 |||| ||| || || | || | || || || || ||||||||||| ||||| || | Sbjct 43928 CACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 43869 Query 25922 CCTGAAAGACAAACATAAAATTGAAAGTCCC 25952 ||||||| | || || ||||| ||||| || Sbjct 43868 CCTGAAATAAAATCAGGAAATTCAAAGTACC 43838 Score = 100 bits (110), Expect = 9e-17 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || ||||||| || | ||| Sbjct 11284 TTTTTGAAACTAGCATATTGGAAGATCAATCGTCCAAAATAAGCATGAGCGGCTATAATA 11225 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||| ||||| | ||| | || || | || ||||||| | || Sbjct 11224 TTCTAAGTTTCTTCCTCTTGAACAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 11165 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTC 25861 |||| | ||| | ||||| || | || || ||||||| | |||| | || Sbjct 11164 CTTTCCCTAATCAAACTAGAAGTTACCAAGGAATTA--TGCATAGAACTTAATAGGGATC 11107 Query 25862 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 25921 ||| ||| || | | || | ||||| || || ||||||||||| ||||| || | Sbjct 11106 AACCTTTTACACCAGTTAGGCCTATGATATGAAATGGGTGCATAAGGATGTTGTGCTCAG 11047 Query 25922 CCTGAAAGACAAACATAAAATTGAAAGT 25949 | ||||| |||| ||| ||||||||||| Sbjct 11046 CTTGAAATACAATCATGAAATTGAAAGT 11019 >seq24164 Length=10202 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 25845 AGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCAT 25904 |||| ||||| | || |||||||||| | ||| | | |||||| || ||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 25905 AAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAG 25964 |||||| |||||||| ||||| || | || ||| ||||||||||| || || | || || Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 25965 AGGCATACCATCAGAGAAACTCCCTT 25990 ||||||| ||||||| ||||| |||| Sbjct 3471 AGGCATAGCATCAGAAAAACTTCCTT 3446 >seq8506 Length=47589 Score = 98.7 bits (108), Expect = 3e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 25894 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 25953 || || ||||||||||| |||||||| || || || |||| ||| ||||||||||| || Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 25954 GAAATACCAAGAGGCATACCATCAGAGAAACT 25985 || || || ||||||||||||||||| ||||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAACT 40171 >seq22815 Length=10841 Score = 95.1 bits (104), Expect = 4e-15 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || |||| || |||| || || || || Sbjct 8981 TTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACGATA 8922 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||| ||||| |||||| | || || | || ||||||| |||| Sbjct 8921 TTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 8862 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||| | || | | ||||| || | | ||||||||| ||||| | || Sbjct 8861 CTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCG 8802 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 || ||| || || | || | || || || || ||||||||||| ||||| || || Sbjct 8801 CCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCATCC 8742 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCC 25952 || || |||| || | ||||||||| || Sbjct 8741 TGGAATACAATAATGACATTGAAAGTACC 8713 >seq2793 Length=100609 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || |||| ||||||||||||||||| || | || Sbjct 12629 GCTAGGTCTAGAGGGAAGTTATGAGCAWTACGTTCATGCATAACTTCCATACCAAGGTTA 12570 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 | |||||| | ||| ||||||||||| Sbjct 12569 GAACGGTTGATAATATCAGCCCAAGT 12544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151909501371144