Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq11273 113 3e-20 seq2718 109 4e-19 seq8314 105 5e-18 >seq11273 Length=79338 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||| ||| || || ||| || || || ||||| || | ||| | | || Sbjct 32406 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCG 32347 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||| ||||| |||| |||||||| || | ||||| ||||||||| Sbjct 32346 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 32287 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||||| ||| ||| | | | ||||| ||| ||||||| ||||| Sbjct 32286 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATT 32227 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||| || |||||||| ||||| Sbjct 32226 GTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 32192 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||| ||| || || ||| || || || ||||| || | ||| | | | Sbjct 32634 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCA 32575 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||| ||||| |||| |||||||| || | ||||| ||||||||| Sbjct 32574 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 32515 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||||| ||| ||| | | | ||||| ||| ||||||| || || Sbjct 32514 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATT 32455 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || |||||||| || ||||| ||||||||| Sbjct 32454 GTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATC 32419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| ||||| | |||| || || | ||| || || |||||| || || || || || Sbjct 32878 GTCACCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTC 32819 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654 | || | || | || || | ||||||||| ||||| || || | ||||||||| | Sbjct 32818 TGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGG 32759 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || |||||||| |||||| ||| ||| | | || || || || Sbjct 32758 TGGGATC-CCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCT 32700 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||||| || || || || || |||| ||| || ||||| ||||||||| Sbjct 32699 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATC 32647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCG-TCGTCCAACTGCTTACCGGCAAA 48634 ||||| ||||| |||||||| | | || || || || || | ||||| || ||||| Sbjct 32154 TCTTTCTGAATGTTGTAATCTGCCA-ACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAA 32096 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| || || | |||| ||||||||||| |||||| ||| ||| Sbjct 32095 GATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATT 32036 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || ||||| ||| ||||||| ||||| || || || ||||| || || || Sbjct 32035 GTCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGAC 31976 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 31975 AAATATTTGCAT 31964 >seq2718 Length=65933 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||||||| || || ||| || || || |||||||||| | Sbjct 44288 CCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 44229 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| ||||||||||| ||||| || ||||| | || ||||||| |||| Sbjct 44228 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGA 44169 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| || || | | | || || |||||| Sbjct 44168 ATCCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 44109 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| || | |||||| ||||| ||||||||| Sbjct 44108 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 44061 >seq8314 Length=67656 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| ||| |||| | || || | |||| Sbjct 25971 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 25912 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 |||||||| || |||| |||||| || || | |||| ||| |||||||| |||||| Sbjct 25911 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 25852 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | ||||| | ||| ||||||| ||||| || || |||||| Sbjct 25851 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGTC 25792 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| |||||||| Sbjct 25791 AGGGTCTTCACAAAGATCTGCAT 25769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380721279107862