Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq20339 259 5e-64 seq7295 152 6e-32 seq22815 149 7e-31 seq12053 147 2e-30 seq94 122 1e-22 seq6413 100 3e-16 seq24164 95.1 1e-14 seq8506 86.0 7e-12 seq6133 86.0 7e-12 seq2793 84.2 2e-11 >seq20339 Length=39107 Score = 259 bits (286), Expect = 5e-64 Identities = 590/889 (66%), Gaps = 28/889 (3%) Strand=Plus/Plus Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657 ||||| ||| |||| || |||||||| || || |||||||| ||| || || || | Sbjct 1469 ATTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGG 1528 Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATT 162717 || |||| ||||| |||||||| || | | ||| |||| ||| | || Sbjct 1529 TCTATTCTTTATGGAAACAACATGATTTGCACTTCTG-----CCTACTTCTGCCACAATA 1583 Query 162718 GGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGT 162777 ||| | || || || || |||||||||| ||| | ||||||| ||||| || |||||| Sbjct 1584 GGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGT 1643 Query 162778 GGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGT 162837 | |||| |||| | | | |||||| | | ||| | | ||| |||||| Sbjct 1644 TGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGT 1703 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||| ||| || || | |||| || |||| ||| |||||||| || | Sbjct 1704 GAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACT 1763 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || | | || | |||| | ||||| || | || | |||||||| ||| | | Sbjct 1764 CCCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTT 1823 Query 162958 GACGCA-ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGA 163016 | | |||||||| || | || ||||||| || | |||| | | ||| | || Sbjct 1824 TAATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGA 1883 Query 163017 GCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTC 163076 ||||||||||| ||||||| || || |||| ||||| | || |||||||| || || Sbjct 1884 ACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTC 1943 Query 163077 ACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 || || ||| ||||| | ||| | || ||| || | ||||| ||| | | || Sbjct 1944 CCTATTCAGTTCTATGAATATTTCAATGGTAACT-CTAGTTCGATCAGGGAACCCATAGA 2002 Query 163137 GCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGT 163196 || || || | ||||| | || || ||||| ||||| ||||| || | || Sbjct 2003 AAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACGT 2062 Query 163197 TGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACG 163256 | ||||||| || ||||| || | ||||||||| ||||| |||||||||||| Sbjct 2063 ATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCTTA 2122 Query 163257 TTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGG 163316 ||| | || ||| |||| | ||| | ||||| || || |||| ||| || | | || Sbjct 2123 TTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTAGG 2182 Query 163317 TGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC 163376 | | |||||||| || ||||| || | |||||| ||||||||||| | |||||| Sbjct 2183 TATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGTTGAC-- 2240 Query 163377 AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGA 163436 ||| | || |||| ||| | | || ||||||||||| Sbjct 2241 ---------AGTCA----------GGGTTATATAATTATCTGTGCTAACCTTGGTATGGA 2281 Query 163437 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||||| || ||||||||||| |||||||| || ||||| ||||| Sbjct 2282 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTATCTGCT 2330 >seq7295 Length=63598 Score = 152 bits (168), Expect = 6e-32 Identities = 209/291 (72%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || | | || | | || || || |||||||||||||| |||||||| || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || || | || | || |||||| ||||| || || || ||||||||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | |||| || |||| || | | || || || | ||||| Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | || | ||||||||||| ||||| || ||||| || ||||||| || ||||| || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTC 163272 |||||||| || ||||| |||||||||||| | |||| | ||| ||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAACTCTCATTCA-TACACATCTTC 44127 Score = 145 bits (160), Expect = 8e-30 Identities = 207/290 (71%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 162983 GTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC 163042 ||||||| || | |||| | || || ||||| |||||||||||||| |||||||| || | Sbjct 11017 GTACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTC 11076 Query 163043 ATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTC 163102 |||| || || | | |||||| ||| | || || || ||| ||||||| ||| Sbjct 11077 ATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCT 11136 Query 163103 TTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATA 163162 | || |||||| | | || || |||| || || | || || || | ||||| | Sbjct 11137 TGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACA 11196 Query 163163 AGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCT 163222 || | ||||| ||||| ||||| || ||| | || ||||||| || ||||| || | Sbjct 11197 GATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGAT 11256 Query 163223 TGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTC 163272 |||||||||| ||||| |||||| ||||| | ||| | ||| ||||| Sbjct 11257 TGATCTTCCAATATGCTAGTTTCAAAAACTCTCATTC-GTACACATCTTC 11305 >seq22815 Length=10841 Score = 149 bits (164), Expect = 7e-31 Identities = 208/291 (71%), Gaps = 1/291 (0%) Strand=Plus/Plus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || ||| | || ||||| | || ||||||||||| |||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || || | || | || |||||| || || || || || ||||||||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || ||||||| | | ||||| |||| ||||| | || || || | ||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || || || |||| || |||| || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTC 163272 || |||||||| ||||| ||| |||||||| ||||| | ||| ||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTC-GTACACATCTTC 9002 >seq12053 Length=52445 Score = 147 bits (162), Expect = 2e-30 Identities = 167/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||||| ||||| | ||||| || | |||||||| | || | | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC- 163374 || | |||||||| |||||||| || ||||||| ||||||||||| || |||||| Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACA 51366 Query 163375 -GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTAT 163433 ||| ||| || ||| |||||||| |||||| | ||| || |||||||| Sbjct 51365 GTCAG--GGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTAT 51308 Query 163434 GGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 |||||||||||| || ||||||||||| |||||||| || ||| Sbjct 51307 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq94 Length=189492 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 |||||||||| ||||| | ||||| || | |||||||| || || | ||| | Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-CGCAGGTGG 163382 |||||||| |||||||| || |||||||| ||||||||||| || ||||| | || | Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT-G 88090 Query 163383 TAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTAT 163442 | | || ||| |||||||| |||||| | ||| | || ||||||||||||||||| Sbjct 88089 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTAT 88030 Query 163443 GCACGAGCGTA 163453 ||| || |||| Sbjct 88029 GCATGAACGTA 88019 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 |||||||||| ||||| | ||||| || | |||||||| || || | ||| | Sbjct 81679 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 81620 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-CGCAGGTGG 163382 |||||||| |||||||| || |||||||| ||||||||||| || ||||| | || | Sbjct 81619 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT-G 81561 Query 163383 TAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTAT 163442 | | || ||| |||||||| |||||| | ||| | || |||||||| |||||||| Sbjct 81560 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTAT 81501 Query 163443 GCACGAGCGTA 163453 ||| || |||| Sbjct 81500 GCATGAACGTA 81490 >seq6413 Length=53986 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 163030 ATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCT 163089 |||||||| || || || | || | || |||||| || || || || || |||||| Sbjct 29190 ATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCT 29131 Query 163090 ATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAG 163149 ||||| | ||| | || |||||| | | ||||| |||| || || | || || Sbjct 29130 ATGCATGCTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGCT 29071 Query 163150 AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGA 163209 || | ||||| | ||||| ||||| ||||| ||||| || || || || ||||||| Sbjct 29070 AATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATGCT 29011 Query 163210 TACTTTGGTCGCTTGATCTTCCA 163232 || ||||| || ||||||||||| Sbjct 29010 TATTTTGGCCGATTGATCTTCCA 28988 >seq24164 Length=10202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 162938 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACA 162997 ||||| |||| ||| ||||| || |||||||| || | ||||||||||| || | || Sbjct 3440 TCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCA 3499 Query 162998 TGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCG 163057 || | | ||||| || || ||||||||||| |||||| || |||||| | | || Sbjct 3500 TGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAGATGTAT 3559 Query 163058 CAGGTGTATTCGGTGGTTCACTCTTTAGTGCT 163089 | | |||||||| || || || || |||||| Sbjct 3560 CTAGGGTATTCGGCGGCTCCCTATTCAGTGCT 3591 >seq8506 Length=47589 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 162951 TTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCA 163010 ||| ||||| | |||||||| || || ||||||||||| || | |||| | || ||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 163011 AGCAGAGCACAACATCCTAATGCACCCCTT 163040 ||| || ||||||||||| |||||||| || Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq6133 Length=71616 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 ||||||| || | |||| | | ||||| || ||| |||||||||| |||||||| || Sbjct 56889 GGTACTTCCAATTTCATGATTCTATTCCAGGCTGAGTACAACATCCTTATGCACCCATTT 56948 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || || | | | || ||||| ||| | || || || | || |||| | ||| Sbjct 56949 CACATCTTAGTCCTAGCTTGTGTAAACGGCGTCTCCCTATTAATTGTATTGCATGCTTC- 57007 Query 163102 CTTGTTA-CTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTA 163160 |||| || ||||| | ||| || |||| || || | || | || | ||||| Sbjct 57008 CTTGATAACTTCTAGTTATATAAGGGAAAGCACAGAAAATGAATTTGCTAATGAAGGTTA 57067 Query 163161 TAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCG 163220 | ||||| ||||| ||||| | || || || | ||||| || || ||||| | Sbjct 57068 CAGATTCGGTCAAGAGGAAGAAATATAGAATATCCTAGCTGCATATTCTTATTTTGGCCA 57127 Query 163221 CTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 |||||||| || ||||| |||||||||||| |||| Sbjct 57128 ATTGATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC 57166 >seq2793 Length=100609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| ||||| | ||| | | |||||||||||||||||||| || |||| | Sbjct 12544 ACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTTATGCATGAACGTAWT 12603 Query 163456 GCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||| |||||||| || ||||| |||||| Sbjct 12604 GCTCATAACTTCCCTCTAGACCTAGCTGCT 12633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552762669585360