Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq20339 315 2e-81 seq7295 129 2e-25 seq12053 125 2e-24 seq22815 114 4e-21 seq8506 107 6e-19 seq24164 105 2e-18 seq94 100 9e-17 seq2793 84.2 7e-12 >seq20339 Length=39107 Score = 315 bits (348), Expect = 2e-81 Identities = 631/924 (68%), Gaps = 40/924 (4%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 ||||| |||||||||||||||||||| || ||||||||||| | ||||||||||| | | Sbjct 2320 TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACAG 2261 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGTTG 17960 | | || | | || |||| ||| | |||| ||||||||| Sbjct 2260 ATAATTATATAACCCT----------GACT-GTC----AACTGCA------GATTGGTTG 2222 Query 17961 AAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATG 18020 || ||||| |||| || ||||||||||||||| ||| || | || ||||| | | || Sbjct 2221 AAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGGGTAAACTAGATA 2162 Query 18021 CAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGTTAAAGCTAGC 18079 || || ||||||||| | | || |||||||| || | | ||||| || ||||| Sbjct 2161 CATACTACAGGCCAAGCAACTAGGATGAAATGTA-ACGAATAAGAGTTGTTGAAACTAGC 2103 Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139 ||| |||||||| || ||||| || ||||||| | || ||||||| || ||||| Sbjct 2102 ATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATTATAAGTTTCTTC 2043 Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--A 18197 ||||| || ||| | || || | || ||| ||| || | | ||| || || | Sbjct 2042 CTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGGTTCCCTGATCGA 1983 Query 18198 AGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 18255 | | || ||| || | || | | ||||| | ||||| | || |||||||||| Sbjct 1982 ACT-AG--AGTTACCATTGAAATA--TTCATAGAACTGAATAGGGAGCCGCCGAATACCC 1928 Query 18256 CTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGA 18315 | |||| || | || || || | ||||||||||| |||||||| | ||||| | Sbjct 1927 CAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCCAAGAATAAAA 1868 Query 18316 ACATGAAATTGAAAGTACC-GCTAATACCAAGAGGCATACCATCAGAGAAA-CTCCCTTG 18373 ||||||||||||||||| || ||| || |||||||||| || | | ||| || ||||| Sbjct 1867 TCATGAAATTGAAAGTACTAGCGAAT-CCTAGAGGCATACGATTAAAAAAAACTTCCTTG 1809 Query 18374 TCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433 || | || | | | || | || || | |||||| | || | ||| | ||||| Sbjct 1808 ACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTTGAACATGCAAC 1749 Query 18434 ACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGC 18493 | |||| | || || |||| || ||||||| ||||| | || ||||||||| Sbjct 1748 AACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGACCCATGTAACA 1689 Query 18494 TGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 18553 | | || | | ||||| | | ||| |||| ||| || | || || |||||||| Sbjct 1688 AGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCATTGTATAACCA 1629 Query 18554 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 18613 || || | || ||| |||||||||||||||| || || | ||| |||| | ||| | Sbjct 1628 TTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTAAACCTATTGTGGCAGAAGT 1569 Query 18614 CGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTC 18673 || | | ||| | || |||||||||||||| || | | | ||| | || || Sbjct 1568 AGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCTTGAAAAAGTTTC 1514 Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733 | |||||||||| ||||| || ||||||||||||| || ||||| |||| | ||| Sbjct 1513 ATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAATAGTAAATACAATAGT 1454 Query 18734 TGCGGTTAAAAGTGCAGGGATCAT 18757 ||| || || | || | ||||||| Sbjct 1453 TGCCGTAAATAATGTACGGATCAT 1430 >seq7295 Length=63598 Score = 129 bits (142), Expect = 2e-25 Identities = 193/272 (71%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| || ||||| | || ||||| || ||||||| || |||||| Sbjct 44106 TTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAATA 44047 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || || || ||||||||||| ||||| | || || | || ||| ||| | || Sbjct 44046 TTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTGTG 43987 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAAC--AAGACTTCCGTGCATAGCAGCGAATAAAGCTC 18243 |||| ||||||| ||||| || | || || ||||||||| ||||| | || Sbjct 43986 CTTTCCCTAATAAAACTAGAAGTTACCAAGGAATT--ATGCATAGCACTGAATAGGGATC 43929 Query 18244 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 |||| ||| || || | || | || || || || ||||||||||| ||||| || | Sbjct 43928 CACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 43869 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCG 18335 | || |||| | || |||||| ||||||||| Sbjct 43868 CCTGAAATAAAATCAGGAAATTCAAAGTACCG 43837 Score = 122 bits (134), Expect = 3e-23 Identities = 190/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 || || || |||||||| |||||||| | || ||||| || ||||||| || | |||| Sbjct 11284 TTTTTGAAACTAGCATATTGGAAGATCAATCGTCCAAAATAAGCATGAGCGGCTATAATA 11225 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || || || ||||| ||||| ||||| | || || | || ||| ||| || || Sbjct 11224 TTCTAAGTTTCTTCCTCTTGAACAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 11165 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAA--GACTTCCGTGCATAGCAGCGAATAAAGCTC 18243 |||| ||||| | ||||| || | || || ||||||| | |||| | || Sbjct 11164 CTTTCCCTAATCAAACTAGAAGTTACCAAGGAATTA--TGCATAGAACTTAATAGGGATC 11107 Query 18244 CACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 ||| ||| || | | || | ||||| || || ||||||||||| ||||| || | Sbjct 11106 AACCTTTTACACCAGTTAGGCCTATGATATGAAATGGGTGCATAAGGATGTTGTGCTCAG 11047 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTAC 18333 |||| ||||| | ||||||||||||||||| Sbjct 11046 CTTGAAATACAATCATGAAATTGAAAGTAC 11017 >seq12053 Length=52445 Score = 125 bits (138), Expect = 2e-24 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 ||||| |||||||||||||||||||| || ||||||||||| | ||||||||||| | Sbjct 51266 TCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAYGG 51325 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTT 17959 |||| | |||||||| || | || | || | ||| | || | |||||||| Sbjct 51326 TTGATGATATCAGCCCAAGTGTTAATTACACGACC-CTGACTGTCAACTACAGATTGGTT 51384 Query 17960 GAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019 ||| |||| ||||| || || |||||||||||| ||| || | || | ||| ||| || Sbjct 51385 GAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAGAT 51444 Query 18020 GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | || ||||||||||| | |||||| |||| Sbjct 51445 ACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTA 51479 >seq22815 Length=10841 Score = 114 bits (126), Expect = 4e-21 Identities = 187/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || |||| || |||| || || || ||| Sbjct 8981 TTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACGATA 8922 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || || || ||||| ||||| || ||| | || || | || ||| ||| ||||| Sbjct 8921 TTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTG 8862 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 |||| || || | | ||||| || | | ||||||||| ||||| | || Sbjct 8861 CTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCG 8802 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305 || ||| || || | || | || || || || ||||||||||| ||||| || | Sbjct 8801 CCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCATCC 8742 Query 18306 TGGAATACGAACATGAAATTGAAAGTACCG 18335 |||||||| | |||| ||||||||||||| Sbjct 8741 TGGAATACAATAATGACATTGAAAGTACCG 8712 >seq8506 Length=47589 Score = 107 bits (118), Expect = 6e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || || ||||||||||| |||||||| ||||||||||| | |||||||||||||||||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAAACT 18367 || || ||||||||||||||||| ||||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAACT 40171 >seq24164 Length=10202 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 18227 AGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCAT 18286 |||| ||||| | || |||||||||| | ||| | | |||||| || ||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 18287 AAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAG 18346 |||||| |||||||| || ||||||| | |||||||||||||||||| | || || Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 18347 AGGCATACCATCAGAGAAACTCCCTT 18372 ||||||| ||||||| ||||| |||| Sbjct 3471 AGGCATAGCATCAGAAAAACTTCCTT 3446 >seq94 Length=189492 Score = 100 bits (110), Expect = 9e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 17863 TACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAG 17922 |||| || ||||||||||||| ||||||||||| | ||||| | || ||||| || Sbjct 81490 TACGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 81549 Query 17923 GTACGACTTGTC-CT--CCAGCTGCTACAATGGATTGGTTGAAGTTGAATCCATTGAGAT 17979 | || || | || | | | ||||| ||||||||||| ||||| ||||| || | Sbjct 81550 TAATTACATGACACTGACTATCAACTACA---GATTGGTTGAAATTGAAACCATTTAGGT 81606 Query 17980 TAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAG 18039 | |||||||||||| ||| || | || ||||| ||| || | || |||||||||| Sbjct 81607 TGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAG 81666 Query 18040 CCAAGAAGAAATGTA 18054 | |||||| |||| Sbjct 81667 CTCGGAAGAAGTGTA 81681 Score = 96.9 bits (106), Expect = 1e-15 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 17863 TACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAG 17922 |||| || ||||||||||| | ||||||||||| | ||||| | || ||||| || Sbjct 88019 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 88078 Query 17923 GTACGACTTGTC-CT--CCAGCTGCTACAATGGATTGGTTGAAGTTGAATCCATTGAGAT 17979 | || || | || | | | ||||| ||||||||||| ||||| ||||| || | Sbjct 88079 TAATTACATGACACTGACTATCAACTACA---GATTGGTTGAAATTGAAACCATTTAGGT 88135 Query 17980 TAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAG 18039 | |||||||||||| ||| || | || ||||| ||| || | || |||||||||| Sbjct 88136 TGAAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAG 88195 Query 18040 CCAAGAAGAAATGTA 18054 | |||||| |||| Sbjct 88196 CTCGGAAGAAGTGTA 88210 >seq2793 Length=100609 Score = 84.2 bits (92), Expect = 7e-12 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | ||||| ||||| ||||||||||||||| |||| || ||||||||||| | || Sbjct 12636 GATAGCAGCTAGGTCTAGAGGGAAGTTATGAGCAWTACGTTCATGCATAACTTCCATACC 12577 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGT 17920 |||||||| | ||||| | |||||||| || Sbjct 12576 AAGGTTAGAACGGTTGATAATATCAGCCCAAGT 12544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151234674961836