Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq20339 152 2e-32 seq12053 123 7e-24 seq94 122 3e-23 seq22815 114 4e-21 seq7295 100 8e-17 >seq20339 Length=39107 Score = 152 bits (168), Expect = 2e-32 Identities = 498/763 (65%), Gaps = 33/763 (4%) Strand=Plus/Minus Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533 ||||| || |||||||| || || || || |||||||| || || | |||||||| ||| Sbjct 2323 AGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCA 2264 Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGG 21593 | | ||| || | | || ||| ||||| | || ||||| |||| Sbjct 2263 CAGATAATTATATAACCC-------TGA----CTGTCAA-------CT-GCAGA--TTGG 2225 Query 21594 TTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAAACC 21651 || || |||||| |||| | ||| |||||||| || || || ||| | | |||| Sbjct 2224 TTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGG--GTAAACT 2167 Query 21652 AAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAA--GACTACGGGAATTATTAAA 21709 | |||| ||| |||||||| ||| | || | |||||| | || || | | || || || Sbjct 2166 AGATACATACTACAGGCCAAGCAACTAGGATGAAATGTAACGAATAAGAG--TTGTTGAA 2109 Query 21710 GCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGT 21769 ||||||||||||||||| || |||||||| || |||| | || |||| ||||| Sbjct 2108 ACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATTATAAGT 2049 Query 21770 CTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC- 21828 |||||||||||||| || ||||||| | || || | ||| | | || | Sbjct 2048 TTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGGTTCCCT 1989 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || || | || || |||| | | ||||| | ||| | || || |||| Sbjct 1988 GATCGAACTA-GA-GTTACCATTGAAATATTCATAGAACTGAATAGGGAGCCGCCGAATA 1931 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || | || || | || |||||| | |||||||| || ||||| ||| || ||| | Sbjct 1930 CCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCCAAGAATA 1871 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATA-GCATCAGAAAAAGAGCCC 22007 | |||| | ||||| || | | | || | |||||| | | | ||||| || Sbjct 1870 AAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAAAACTTCCT 1811 Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 || || | || | | | ||| | || | | ||| || | |||| || | ||| Sbjct 1810 TGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTTGAACATGCA 1751 Query 22068 ACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 |||| ||| | || | | || || | | ||||| |||||||| || ||||||||| Sbjct 1750 ACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGACCCATGTAA 1691 Query 22128 GCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 | | || |||| | |||||| | | | |||| | || | || ||||| | | Sbjct 1690 CAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCATTGTATAAC 1631 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTA 22230 |||||||||| | || ||||||| |||||||| || |||| Sbjct 1630 CATTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTA 1588 >seq12053 Length=52445 Score = 123 bits (136), Expect = 7e-24 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || |||||||| || || || || |||||||| || || | |||||||| ||| | Sbjct 51265 GTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAYG 51324 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||| | || |||||||| ||||| || || | || | | | | | ||||||||| Sbjct 51325 GTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGTT 51384 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGT--AGACACGCCAAGCGCAGCAAACCAA 21653 || |||||||||| | |||||||||||| || || || ||||| |||||| Sbjct 51385 GAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCG--ATAAACCAG 51442 Query 21654 ATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688 |||| ||| |||||||| ||||| || ||||| || Sbjct 51443 ATACGTACTACAGGCCAAGCAGCTAGGAAGAAGTG 51477 >seq94 Length=189492 Score = 122 bits (134), Expect = 3e-23 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 21501 CGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTG 21560 || |||||||| || |||| |||||||| |||||||| | || || ||||| ||||| Sbjct 81492 CGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTA 81551 Query 21561 ATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAA 21620 || || || | | | | | | | ||||||||| || ||||||||||| | ||||||| Sbjct 81552 ATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAA 81611 Query 21621 GCCATGGT--AGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAA 21678 ||||| || || || ||||| | |||||| |||||||| |||||||| ||||| Sbjct 81612 GCCATAGTGCTGATACCTAAAGCG--GTAAACCAGATACCTACTACAGGCCAAGCAGCTC 81669 Query 21679 GAAAGAAATG 21688 | ||||| || Sbjct 81670 GGAAGAAGTG 81679 Score = 116 bits (128), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 21501 CGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTG 21560 || |||||||| || || | |||||||| |||||||| | || || ||||| ||||| Sbjct 88021 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTA 88080 Query 21561 ATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAA 21620 || || || | | | | | | | ||||||||| || ||||||||||| | ||||||| Sbjct 88081 ATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAA 88140 Query 21621 GCCATGGT--AGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAA 21678 ||||| || || || ||||| | |||||| |||||||| |||||||| ||||| Sbjct 88141 GCCATAGTGCTGATACCTAAAGCG--GTAAACCAGATACCTACTACAGGCCAAGCAGCTC 88198 Query 21679 GAAAGAAATG 21688 | ||||| || Sbjct 88199 GGAAGAAGTG 88208 >seq22815 Length=10841 Score = 114 bits (126), Expect = 4e-21 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 21695 ACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGC 21754 ||| || || || || ||||||||||||||||| | || |||| ||| | || || || Sbjct 8988 ACGAGAGTTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGC 8929 Query 21755 AACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTC 21814 || ||||| ||||| |||||||||||||| || ||||||| | || || | | Sbjct 8928 TACGATATTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 8869 Query 21815 TTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAA 21874 |||||| | || | || | | || || |||| | | | ||||||||| ||| | Sbjct 8868 TTCAGTGCTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAG 8809 Query 21875 ACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTG 21934 || || ||| || || | || | |||||||| || |||||||| || ||||| Sbjct 8808 GGAGCCGCCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTG 8749 Query 21935 CTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCG 21971 ||| ||||||| || | ||| ||||| || ||| Sbjct 8748 GTCATCCTGGAATACAATAATGACATTGAAAGTACCG 8712 >seq7295 Length=63598 Score = 100 bits (110), Expect = 8e-17 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 21699 GAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACA 21758 || || || || ||||||||||| ||||| | || |||||||| | ||||| || ||| Sbjct 44109 GAGTTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACA 44050 Query 21759 ATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCA 21818 ||||| ||||| ||||| |||||| |||| | ||||| | || || | | || Sbjct 44049 ATATTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTT 43990 Query 21819 GTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTC 21878 || | || | ||| | || || |||| | | ||||||||| ||| | Sbjct 43989 GTGCTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTATGCATAGCACTGAATAGGGAT 43930 Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 ||||| ||| || || | || | |||||||| || |||||||| || ||||||||| Sbjct 43929 CCACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 43870 Query 21939 GCCTGGAA 21946 ||||| || Sbjct 43869 GCCTGAAA 43862 Score = 98.7 bits (108), Expect = 3e-16 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 21699 GAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACA 21758 || || || || ||||||||||||||||| | || |||||||| | ||||| || | | Sbjct 11287 GAGTTTTTGAAACTAGCATATTGGAAGATCAATCGTCCAAAATAAGCATGAGCGGCTATA 11228 Query 21759 ATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCA 21818 ||||| ||||| |||||||||||| |||| ||||||| | || || | | ||| Sbjct 11227 ATATTCTAAGTTTCTTCCTCTTGAACAAATCTGTAACCTTCATTAGCAGATTCATTTTCT 11168 Query 21819 GTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTC 21878 || | || | ||| | || || |||| | | ||||||| | || | Sbjct 11167 GTGCTTTCCCTAATCAAACTAGAAGTTACCAAGGAATTATGCATAGAACTTAATAGGGAT 11108 Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 | ||| ||| || | | || | || ||||| || |||||||| || ||||||||| Sbjct 11107 CAACCTTTTACACCAGTTAGGCCTATGATATGAAATGGGTGCATAAGGATGTTGTGCTCA 11048 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGT 21967 || || || || | |||| | ||||| || Sbjct 11047 GCTTGAAATACAATCATGAAATTGAAAGT 11019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146127102565320