Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq25728 104 3e-17 seq5004 104 3e-17 seq15927 84.2 3e-11 >seq25728 Length=33906 Score = 104 bits (114), Expect = 3e-17 Identities = 277/419 (66%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||| | ||| |||| ||||||| | || | || || || || Sbjct 14144 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCA 14085 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 14084 AAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATT 14025 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTT 175409 || |||||| | ||| ||||| || || | || | || | || || |||||||| Sbjct 14024 GCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTTGAGATGTT 13966 Query 175410 TGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACC 175469 ||||||||| || ||| | || || ||||| || | | ||| |||||| || Sbjct 13965 TGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCC 13906 Query 175470 ATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGT 175527 || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 13905 TTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGG 13846 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 13845 AGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGT 13788 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 13787 TTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 13729 >seq5004 Length=42262 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| | || |||| | || ||||| | ||| ||||| Sbjct 9684 CCAGGTACTGGGAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 9625 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 9624 TTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 9565 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 | ||| | ||||| | || ||| || | || |||||||| || ||||||| Sbjct 9564 AGGGATTTGTTTGAGAAGGC-----AAAGTCGAAAGCGCCTTGTATTGTGTTTATTGATG 9510 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||||||| ||||| | |||| | | || ||| | | |||||| ||||| | Sbjct 9509 AGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGG 9450 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || || |||||||| || | || || |||||||| || Sbjct 9449 AGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 9410 >seq15927 Length=13211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 75190 |||| ||| | || |||||||||| ||||||||||||| | | || ||| | | | Sbjct 4343 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTTTTAAAGATT 4284 Query 75191 GATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCAC 75250 | || | | |||||| ||||| | ||| | ||| | || | | || |||||| Sbjct 4283 CAGGGAAAGATTGTGGAAAGGCCACAACATATGCTGATGAGAGTATCTGTTGGAATCCAC 4224 Query 75251 GGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT 75310 || || ||||| |||||| | |||||| | |||||| ||| | ||||| | Sbjct 4223 AAAGAGGATATTGAATCTGTCATCATGACATATCATTTGATGTCTCAACGCTGGTTCACT 4164 Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| | ||||| || || |||||||| || ||||| || || Sbjct 4163 CATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 4120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596222142950720