Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq20339 221 1e-52 seq22815 140 4e-28 seq7295 140 4e-28 seq12053 109 7e-19 seq6413 102 1e-16 seq8506 93.3 5e-14 seq94 93.3 5e-14 seq24164 87.8 2e-12 >seq20339 Length=39107 Score = 221 bits (244), Expect = 1e-52 Identities = 589/888 (66%), Gaps = 43/888 (5%) Strand=Plus/Minus Query 7884 AGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACC 7943 ||||||| | ||||| |||||||| || ||||| | ||||||||||||||||||||| Sbjct 2330 AGCAGAT---AGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 2274 Query 7944 TAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAAC 8003 | ||| || | | | | || | |||| || || ||||| Sbjct 2273 AAGGTTAGCACAGATAATTATATAACCCT------GACTG---------------TCAAC 2235 Query 8004 AACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGA 8063 | |||||||| || || || | || |||||||| ||||| ||| ||||| | || Sbjct 2234 TGCAGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGG 2175 Query 8064 AGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACT-GT 8122 || ||| | | |||||| || || | | | | |||| ||| || | || || || Sbjct 2174 GGTAAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTA-ACGAATAAGAGT 2116 Query 8123 TGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 |||| |||| | ||||| |||||||| ||| ||||| || ||||||| | || || Sbjct 2115 TGTTGAAACTA-GCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTA 2057 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 ||||| || ||||| |||||||| || | ||||| | || ||| || ||| | Sbjct 2056 TTATAAGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATG 1997 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 | || ||||| | ||| || || | ||| | ||||| |||||| || || || Sbjct 1996 GGTTCCCTGATCGAACTAGA-GTTACCATTGAAATATTCATAGAACTGAATAGGGAGCCG 1938 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | || | || ||| || || || | |||||||| ||||| || || | Sbjct 1937 CCGAATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCC 1878 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 ||||| | |||||| || || |||| || | ||||||||||| | || | | || Sbjct 1877 AAGAATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAA- 1819 Query 8422 GAA---CCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||| | ||| | | |||||| | ||||| || ||| | | |||| Sbjct 1818 -AACTTCCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTT 1760 Query 8479 CTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCT 8537 | |||| ||| ||| | ||| | |||| || || | ||| ||||||| | Sbjct 1759 GAACATGCAACAACAATCTAAGGTGGCGTACC-CAGAGGGAAACTAAGATCCCACTCACG 1701 Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 |||||||||| ||| | ||||| | |||||| | | || | | ||| || | || Sbjct 1700 ACCCATGTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACC 1641 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| ||||| | | || ||||||| || || || || ||||| || || Sbjct 1640 ATTGTATAACCATTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTAAACCTAT 1581 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAAT-GAAC 8716 | ||| ||| | | | ||| | | || |||||||||||||| | |||| || | Sbjct 1580 TG---TGGCAGAAGTA--GGCAGAAGTGCAAATCATGTTGTTTCCATA-AAGAATAGACC 1527 Query 8717 CTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAA 8764 || || || |||| ||||||| || || || || || |||||||||| Sbjct 1526 TTGAAAAAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAA 1479 >seq22815 Length=10841 Score = 140 bits (154), Expect = 4e-28 Identities = 195/271 (72%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| ||||||||||||| |||| || |||| || || || | Sbjct 8982 GTTGTTRAAACTA-GCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACGA 8924 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 |||| || || ||||| |||||||| || | ||||| | || ||| || | ||||| Sbjct 8923 TATTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCAG 8864 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | | || ||||| | | |||| || || || ||| | |||||||||||||| || || | Sbjct 8863 TGCTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGC 8804 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | || | ||| |||| ||| || || || || |||||||| ||||| || || Sbjct 8803 CGCCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCAT 8744 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACC 8390 | |||||||| | |||| || || ||||| Sbjct 8743 CCTGGAATACAATAATGACATTGAAAGTACC 8713 >seq7295 Length=63598 Score = 140 bits (154), Expect = 4e-28 Identities = 195/271 (72%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| || ||||| |||| ||||| || ||||||| || |||| Sbjct 44107 GTTGTTGAAACTA-GCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAA 44049 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 |||| || || |||||||||||| |||| | ||||| | || ||| || | || | Sbjct 44048 TATTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTG 43989 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | | || || || | | ||| || || || ||| |||||||||||||| || |||| Sbjct 43988 TGCTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTATGCATAGCACTGAATAGGGATC 43929 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 |||| | ||| |||| ||| || || || || |||||||| ||||| ||||| | Sbjct 43928 CACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 43869 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACC 8390 | || |||| | || ||| || || ||||| Sbjct 43868 CCTGAAATAAAATCAGGAAATTCAAAGTACC 43838 >seq12053 Length=52445 Score = 109 bits (120), Expect = 7e-19 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 7895 AGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTC 7954 |||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| || Sbjct 51264 AGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAY 51323 Query 7955 TGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGT 8014 ||| | | ||| |||| || ||| | ||| | | ||||| || ||||||| Sbjct 51324 GGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGT 51383 Query 8015 TAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAA 8074 | || | || || || ||||| || ||||| |||| ||||| | || | ||||| | Sbjct 51384 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAGA 51443 Query 8075 CACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108 || ||| || || | | ||| ||||||||||| Sbjct 51444 TACGTACTACAGGCCAAGCAGCTAGGAAGAAGTG 51477 >seq6413 Length=53986 Score = 102 bits (112), Expect = 1e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 ||||| ||| |||||||| |||| ||||| || ||||||| || || ||||| || | Sbjct 28978 ACGATTTATA-TGGAAGATCAATCGGCCAAAATAAGCATGAGCGGCTACGATATTCTAAG 29036 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| |||||||| || | ||||| | || ||| || | ||| || | || | Sbjct 29037 TTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGCTTTCCC 29096 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||| | |||||||||||||| || || || || | Sbjct 29097 TGATCAAACTAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCGCCTTTTA 29156 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAA 8344 ||| |||| ||| || || || || ||||||| Sbjct 29157 CACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAA 29192 >seq8506 Length=47589 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCA 8391 || || |||||||| ||||| || || ||||||||||| | |||||| || || |||||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 8392 GAAATACCTAGAGGCATTCCATCAGAGAA 8420 || || ||||||||||| |||||||| || Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAA 40168 >seq94 Length=189492 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 7923 TTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAAT 7982 ||||||||||||||||||||| | ||| || | ||| | | || |||| || ||| Sbjct 88023 TTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTAAT 88082 Query 7983 GATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGC 8042 | | || | | |||||| || |||||||| || || || || || ||||| || || Sbjct 88083 TACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGC 88142 Query 8043 CATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAA 8102 ||| |||| ||||| | || || ||||| | || ||| || || | | ||| |||| Sbjct 88143 CATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTCGGAA 88202 Query 8103 GAAGTG 8108 |||||| Sbjct 88203 GAAGTG 88208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 7923 TTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAAT 7982 ||||||||||||||| ||||| | ||| || | ||| | | || |||| || ||| Sbjct 81494 TTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGTTAAT 81553 Query 7983 GATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGC 8042 | | || | | |||||| || |||||||| || || || || || ||||| || || Sbjct 81554 TACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGC 81613 Query 8043 CATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAA 8102 ||| |||| ||||| | || || ||||| | || ||| || || | | ||| |||| Sbjct 81614 CATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTCGGAA 81673 Query 8103 GAAGTG 8108 |||||| Sbjct 81674 GAAGTG 81679 >seq24164 Length=10202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 8283 AGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCAT 8342 ||||||||| || || || ||||| | | | ||| || |||||| || ||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 8343 AAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAG 8402 ||| ||||| || || || ||||||| | |||||| || || |||||||| | ||||| Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 8403 AGGCATTCCATCAGAGAA 8420 |||||| ||||||| || Sbjct 3471 AGGCATAGCATCAGAAAA 3454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615503706341680