Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq20339 152 2e-32 seq12053 123 7e-24 seq94 122 3e-23 seq22815 114 4e-21 seq7295 100 8e-17 >seq20339 Length=39107 Score = 152 bits (168), Expect = 2e-32 Identities = 498/763 (65%), Gaps = 33/763 (4%) Strand=Plus/Plus Query 41457 TACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTC 41516 |||| || |||||||| ||||||| || | ||||||||||| | ||||| || | | Sbjct 1588 TACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTTGCC 1647 Query 41517 CATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGT 41576 | | |||| | | | |||||| | |||| || | | ||||||||| || |||| Sbjct 1648 CTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGAGT 1707 Query 41577 GGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTG 41636 |||| ||||| | | || || | | || | ||| ||||||| | || |||| Sbjct 1708 GGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCCCA 1767 Query 41637 TCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATG 41696 | || ||| | | || | ||| | | | || | || || || ||||| | | Sbjct 1768 TTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTTAAT 1827 Query 41697 C-TATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCAC 41755 | |||||| | || | | | || ||||| | |||| | | ||| || ||| ||| Sbjct 1828 CGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAACAC 1887 Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815 || || |||||||| | |||||| || | || || | || ||||| || || | Sbjct 1888 AACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCCCTA 1947 Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTC-GTGAGACGACTGAAGA 41874 ||| | ||||| | | |||| || || | || || | || | | ||| Sbjct 1948 TTCAGTTCTATGAATATTTCAATGGTAAC-TC-TAGTTCGATCAGGGAACCCATAGAAAG 2005 Query 41875 GGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGC 41934 | || || | ||||||| || |||||||||||||| ||||| |||| || | Sbjct 2006 TGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACGTATC 2065 Query 41935 TGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAG 41994 |||| || |||||||| || ||||||||||||||||| || || || | | || Sbjct 2066 CACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAA--CTCTTAT 2123 Query 41995 TC--TTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGC 42052 || | |||||| | || | ||| |||||||| ||| |||| | |||| | | ||| Sbjct 2124 TCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTAC--CCCTTTAG 2181 Query 42053 GTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTG 42110 || || || |||||||| ||| | |||| |||||| || |||||| ||||| || Sbjct 2182 GTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAA--TCTGC-AG--- 2235 Query 42111 CTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTG 42170 | ||||| ||| || | | || ||| | |||| |||||||| | | Sbjct 2236 ----TTGACAG----TCA-------GGGTTATATAATTATCTGTGCTAACCTTGGTATGG 2280 Query 42171 AGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 | || |||||||| || || || || |||||||| || ||||| Sbjct 2281 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 2323 >seq12053 Length=52445 Score = 123 bits (136), Expect = 7e-24 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 || ||||| || ||||| |||||||| ||| |||| |||||| ||||| || || Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTAT--CGCTTTAGGTATCA 51420 Query 42059 --ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116 || |||||||||||| | |||||||||| || ||||||||| | | | | | | Sbjct 51419 GCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGG 51360 Query 42117 GACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGA 42176 | | || || ||||| |||||||| || | |||| ||| |||||||| | || || | Sbjct 51359 GTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTA 51300 Query 42177 TGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 ||||||| || || || || |||||||| || ||| Sbjct 51299 TGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq94 Length=189492 Score = 122 bits (134), Expect = 3e-23 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 || ||||| | ||||| |||||||| |||||||| |||||| | ||||| || || Sbjct 81679 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCA 81622 Query 42059 --ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116 || |||||||||||| | ||||||||||| || ||||||||| | | | | | | Sbjct 81621 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 81562 Query 42117 GACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGA 42176 | || || || ||||| ||||| || || | |||||||| |||||||| |||| || | Sbjct 81561 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTA 81502 Query 42177 TGCATGAGCG 42186 ||||||| || Sbjct 81501 TGCATGAACG 81492 Score = 116 bits (128), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 || ||||| | ||||| |||||||| |||||||| |||||| | ||||| || || Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTAC--CGCTTTAGGTATCA 88151 Query 42059 --ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116 || |||||||||||| | ||||||||||| || ||||||||| | | | | | | Sbjct 88150 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 88091 Query 42117 GACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGA 42176 | || || || ||||| ||||| || || | |||||||| |||||||| | || || | Sbjct 88090 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTA 88031 Query 42177 TGCATGAGCG 42186 ||||||| || Sbjct 88030 TGCATGAACG 88021 >seq22815 Length=10841 Score = 114 bits (126), Expect = 4e-21 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 41716 CGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTT 41775 ||| || ||||| ||| | || ||||||| ||| ||||| || |||||||| || || Sbjct 8712 CGGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATT 8771 Query 41776 TCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAG 41835 |||||| | || | || || ||| || || | ||| ||||||||| | | Sbjct 8772 TCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTC 8831 Query 41836 CCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTA 41895 | |||| || || | | || | || | |||||| | | || || | ||||| Sbjct 8832 CTTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 8891 Query 41896 CAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCG 41955 || || |||||||||||||| ||||| ||||| || || || || | ||| |||| || Sbjct 8892 CAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCG 8951 Query 41956 GCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGT 41992 | ||||||||||||||||| || || || || ||| Sbjct 8952 ATTAATCTTCCAATATGCTAGTTTYAACAACTCTCGT 8988 >seq7295 Length=63598 Score = 100 bits (110), Expect = 8e-17 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTA 41800 || |||||||||||||| || |||||||| || |||||||| | || | || || ||| Sbjct 43862 TTTCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTA 43921 Query 41801 TTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGT 41860 ||||| | ||| ||||||||| | | |||| || || | ||| | Sbjct 43922 AAAGGTGGATCCCTATTCAGTGCTATGCATAATTCCTTGGTAACTTCTAGTTTTATTAGG 43981 Query 41861 GAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACT 41920 || | || || | | || || | ||||| | |||| |||||| ||||| ||| Sbjct 43982 GAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAAATATTTGTTCAAGAAGAAGAAACT 44041 Query 41921 TACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980 || |||||||| || ||||| | |||||||| || | ||||| ||||||||||| || Sbjct 44042 TAGAATATTGTAGCCGCTCATGCTTATTTTGGACGATTGATCTTACAATATGCTAGTTTC 44101 Query 41981 AATAATTC 41988 || || || Sbjct 44102 AACAACTC 44109 Score = 98.7 bits (108), Expect = 3e-16 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 41720 ACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCAC 41779 || ||||| | |||| | || || || ||||||||||| || |||||||| || ||||| Sbjct 11019 ACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTCAT 11078 Query 41780 ATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTG 41839 || | || | | || ||| ||| | | || | ||||||| | | || Sbjct 11079 ATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCTTG 11138 Query 41840 GTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAG 41899 || || || | ||| | || | || ||| | | || || | ||||||| Sbjct 11139 GTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 11198 Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 |||| |||||||||||| ||||| |||||| | || ||||| | |||||||| || | Sbjct 11199 TTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGATTG 11258 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTC 41988 ||||||||||||||||| || || || || Sbjct 11259 ATCTTCCAATATGCTAGTTTCAAAAACTC 11287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146133499024176