Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq20339 210 6e-50 seq12053 134 4e-27 seq22815 118 3e-22 seq24164 84.2 6e-12 seq4606 84.2 6e-12 >seq20339 Length=39107 Score = 210 bits (232), Expect = 6e-50 Identities = 587/895 (66%), Gaps = 42/895 (5%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||| | | || ||| ||||||| ||||| |||||||||||||| |||| |||| || | Sbjct 1463 TTTACTATTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTT 1522 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 || | ||| |||| ||||| |||||||| || ||| | |||||| | | Sbjct 1523 TCAAGGTCTATTCTTTATGGAAACAACATGAT-----TTGCACTTCTGCCTACTTCTGCC 1577 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 |||| || ||||||| || | |||||||||| || |||| |||||| | ||| Sbjct 1578 ACAATAGGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATAC 1637 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG--GTATCTTCTCTTACT 42619 ||||| | |||||| | || | | | |||||| | | | |||||| | |||| Sbjct 1638 AATGGTTGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCT--TGTTACA 1695 Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679 |||| || || ||||| ||| | || || || | | || | ||| ||||||| | Sbjct 1696 TGGGTCGTGAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCAT 1755 Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACT---GCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 || | || | |||||| ||| ||| | ||| | || | ||| | || |||| Sbjct 1756 GTTCAACTCCCAT---TGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAG 1812 Query 42737 G--TTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794 | | ||||| | || | |||||||| || | | |||| ||||| |||||| | | Sbjct 1813 GAAGTTTTTTTTA-ATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTT 1871 Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854 ||| || |||||| ||||| |||||||| | || || || | || |||| || || Sbjct 1872 ATTCTTGGATGAACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGT 1931 Query 42855 ATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCG 42914 ||| || || || | ||| ||||| || | | || | |||| | | | Sbjct 1932 ATTCGGCGGCTCCCTATTCAGTTCTATGAATATTTCAATGGT-AACTCTAGTTCGATCAG 1990 Query 42915 TGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974 ||| | | |||| ||| ||| | || |||| || ||||||||||| || || Sbjct 1991 GGAACCCATAGAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAAC 2050 Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034 |||||| | || | | |||||||| ||||| || |||||||||||||| | ||| Sbjct 2051 TTATAATAACGTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGC-TAGTT 2109 Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093 | || || | || || || ||| | || | |||||||| || || | || | || Sbjct 2110 TCAACAACTCTTATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGT 2169 Query 43094 TCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAAT 43153 | || || | || ||| |||||||| |||||| | |||| ||| || || ||||||| Sbjct 2170 TTACCCCTTTAGGTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAAT 2229 Query 43154 CACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCA 43213 | ||||| | |||| | || | || ||| | |||| | Sbjct 2230 CTGCAGTTGACAGTCAGGGTTATATAAT---------------TATCT------GTGCTA 2268 Query 43214 ACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCT 43268 ||||||| | || || ||||| || || ||||| ||||||||||| || || || Sbjct 2269 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 2323 >seq12053 Length=52445 Score = 134 bits (148), Expect = 4e-27 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 43048 TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGC 43107 || || |||||||| || || |||||||| || || | || ||||| | || | || Sbjct 51483 TCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGT 51424 Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167 |||| |||||||| || ||| | |||||||| | || |||||||| | ||||| | | Sbjct 51423 ATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGT 51364 Query 43168 CAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAG 43227 ||| || ||| || |||||||||||||| | || | ||| |||||||| | || Sbjct 51363 CAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAA 51304 Query 43228 GTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 || ||||| || || ||||| ||||||||||| || || Sbjct 51303 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 51266 >seq22815 Length=10841 Score = 118 bits (130), Expect = 3e-22 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 |||||| ||||| |||| | || ||||||| ||| || ||||| |||||||| || || Sbjct 8712 CGGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATT 8771 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || || | || | || || ||| || || || | ||| |||||||||| | Sbjct 8772 TCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTC 8831 Query 42891 TCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTA 42950 | || || |||| | | | | |||| |||||||| ||| ||| | || || Sbjct 8832 CTTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 8891 Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 || |||||||||||||| || ||||| || || || || ||||||| ||| |||| || Sbjct 8892 CAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCG 8951 Query 43011 GCTTATCTTCCAATATGC 43028 | |||||||||||||| Sbjct 8952 ATTAATCTTCCAATATGC 8969 >seq24164 Length=10202 Score = 84.2 bits (92), Expect = 6e-12 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42741 TTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCA 42800 |||||| |||| |||||||| || | || ||||| ||||| |||||| | | ||||| Sbjct 3453 TTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCATGATTATATTCCA 3512 Query 42801 GGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGG 42860 ||||||||| ||||| |||||||| || |||||| | | ||| | | ||||| || Sbjct 3513 GGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAGATGTATCTAGGGTATTCGG 3572 Query 42861 TGGGTC 42866 || || Sbjct 3573 CGGCTC 3578 >seq4606 Length=79409 Score = 84.2 bits (92), Expect = 6e-12 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| | || || |||||| | ||||| ||||||||||||| |||||||||| Sbjct 33390 CTGTATTTATTATTGCCTTTATTGCTACTCCTCCAGTAGACATTGATGATATTCGTGAAC 33331 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACA 42469 |||| || || | ||| || || || ||||||| Sbjct 33330 CTGTTTCAGGGTGTCTACTTTACGGAAACAACA 33298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143453382763512