Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq20339 208 2e-49 seq12053 127 6e-25 seq94 116 1e-21 seq8506 98.7 3e-16 seq24164 95.1 4e-15 seq7295 84.2 6e-12 >seq20339 Length=39107 Score = 208 bits (230), Expect = 2e-49 Identities = 582/888 (66%), Gaps = 40/888 (5%) Strand=Plus/Minus Query 25879 TAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGC 25938 || ||| || || ||||||||||||||||| || ||||||||||| | || |||||||| Sbjct 2324 TAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGC 2265 Query 25939 TCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTG 25998 | | ||| ||||| | || | | || ||| | || || Sbjct 2264 ACAG----ATA-----------------ATTATATAACCCTGACTGTCAACTGCAGATTG 2226 Query 25999 GTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCA 26058 ||| || || ||| ||||||||||||| ||||| ||| |||||| | || || | | | Sbjct 2225 GTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGGGTAAACTA 2166 Query 26059 TATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACT 26118 || | || || ||||||| | | || | |||||| | ||| ||| || ||||| Sbjct 2165 GATACATACTACAGGCCAAGCAACTAGGATGAAATGTAACGAATAAGAGTTGTTGAAACT 2106 Query 26119 CGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTC 26178 ||||| || || || ||| ||||| || || || | | || ||||||| || || Sbjct 2105 AGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATTATAAGTTTC 2046 Query 26179 TTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAG--ACTTCCTCTGTCGTTTCTGCA 26236 ||| ||||| || || | || || | ||| || |||| || || | ||| Sbjct 2045 TTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGGTTCCCTGAT 1986 Query 26237 ATAAGTGAGGAAGTAACCA---AACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | || ||| |||| || | | ||||| | ||| || | || ||||| Sbjct 1985 CGAACT-AG--AGTTACCATTGAAATA---TTCATAGAACTGAATAGGGAGCCGCCGAAT 1932 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 |||||| |||| || || || ||| ||||||| || || || ||||| | |||| Sbjct 1931 ACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCCAAGAAT 1872 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA-CTCCC 26412 | | ||| || || ||||||| || || || |||||||| | || | |||| || || Sbjct 1871 AAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAAAACTTCC 1812 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 ||| || | || | | |||||| | ||||| || || | | || | || | |||| Sbjct 1811 TTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTTGAACATGC 1752 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATA 26532 ||||| ||| | ||| | | || || | || || ||||||| | || || Sbjct 1751 AACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGACCCATGTA 1692 Query 26533 TGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAG 26592 | |||||| | ||||||||| | | ||| |||| ||| || | |||||||||| Sbjct 1691 ACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCATTGTATAA 1632 Query 26593 CCACTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 ||| || || | | |||| |||||||||| ||||||||||||| || |||| | || Sbjct 1631 CCATTCATCAACGGATGCCT-CTTCCCAGATTGGGTAAAAATGTAAACCTATTGTGGCAG 1573 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | || | | ||| | || || |||||||| || | | || | |||| | Sbjct 1572 AAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCTTGAAAAAG 1518 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAA 26759 ||| | || ||||| || ||||| || || || || | |||||||| Sbjct 1517 TTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAA 1470 >seq12053 Length=52445 Score = 127 bits (140), Expect = 6e-25 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 25881 AGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTC 25940 |||| || || ||||||||||||||||| || ||||||||||| | || |||||||| Sbjct 51264 AGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAY 51323 Query 25941 GGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGT 26000 |||| | | ||||||||| || |||| || | | || ||||| || |||| Sbjct 51324 GGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGT 51383 Query 26001 TAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATA 26060 | || | |||||||||||||| || ||||| |||| |||||| | || | | ||| | Sbjct 51384 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAGA 51443 Query 26061 TGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAAC 26102 | | || || ||||||| ||| || ||||| || | |||| Sbjct 51444 TACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 51485 >seq94 Length=189492 Score = 116 bits (128), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 25905 TACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAG 25964 |||| || ||||||||||||| || |||||||| ||||| | | ||| ||||| || Sbjct 81490 TACGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 81549 Query 25965 GTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTA 26023 |||| | | || | || ||| ||||| || ||||| || || |||||||||||||| Sbjct 81550 TAATTA-CATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 81608 Query 26024 AATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCA 26083 || ||||| |||| |||||| | || || | ||| || || || || ||||||| ||| Sbjct 81609 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 81668 Query 26084 AGAAAGAAATG 26094 | ||||| || Sbjct 81669 CGGAAGAAGTG 81679 Score = 113 bits (124), Expect = 1e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 25905 TACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAG 25964 |||| || ||||||||||| | || |||||||| ||||| | | ||| ||||| || Sbjct 88019 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 88078 Query 25965 GTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTA 26023 |||| | | || | || ||| ||||| || ||||| || || |||||||||||||| Sbjct 88079 TAATTA-CATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 88137 Query 26024 AATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCA 26083 || ||||| |||| |||||| | || || | ||| || || || || ||||||| ||| Sbjct 88138 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 88197 Query 26084 AGAAAGAAATG 26094 | ||||| || Sbjct 88198 CGGAAGAAGTG 88208 >seq8506 Length=47589 Score = 98.7 bits (108), Expect = 3e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| || || || ||||| ||||||||||| | ||| || || ||||||||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACT 26409 ||||| || |||||||| |||||| |||||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAACT 40171 >seq24164 Length=10202 Score = 95.1 bits (104), Expect = 4e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 26269 AGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCAT 26328 |||| ||| || | || ||||| |||| || ||| | |||||| ||| |||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 26329 GAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAG 26388 || || || ||||| || ||||||| | ||| || || ||||||||||||| || || Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 26389 AGGCATTCCATCACTAAAACTCCCTTGTCCGA 26420 |||||| ||||| |||||| |||| |||| Sbjct 3471 AGGCATAGCATCAGAAAAACTTCCTTAACCGA 3440 >seq7295 Length=63598 Score = 84.2 bits (92), Expect = 6e-12 Identities = 183/272 (67%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 26107 GTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAAT 26166 ||| || ||||| ||||| || || || |||| ||||| || | || || || ||||| Sbjct 44107 GTTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAAT 44048 Query 26167 ATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGT 26226 ||| || || ||||| ||||| |||| | || || | ||| || | | | ||| Sbjct 44047 ATTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTGT 43988 Query 26227 CGTTTCTGCAATAAGTGAGGAAGTAACCAA--ACTTCCGTGCATAGCAGCGAAAAGAGCT 26284 |||| ||||| ||||| ||||| | || ||||||||| ||| || | | Sbjct 43987 GCTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTA--TGCATAGCACTGAATAGGGAT 43930 Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 ||||| || ||||| | || || || ||||||||||| || || || || || Sbjct 43929 CCACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 43870 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACC 26376 || || |||| | || || || |||||||| Sbjct 43869 GCCTGAAATAAAATCAGGAAATTCAAAGTACC 43838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147630270396480