Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq20339 269 3e-67 seq12053 134 2e-26 seq22815 132 6e-26 seq7295 122 1e-22 seq94 113 5e-20 seq6413 100 3e-16 seq24164 95.1 1e-14 seq8506 95.1 1e-14 seq2793 84.2 3e-11 >seq20339 Length=39107 Score = 269 bits (298), Expect = 3e-67 Identities = 593/887 (67%), Gaps = 30/887 (3%) Strand=Plus/Plus Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 |||||| ||||||| ||||| ||||||||||||||||||| |||| | | | | ||| Sbjct 1472 GCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGTCT 1531 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 | | ||||| |||||||| || | || || | |||| ||| | |||| ||| Sbjct 1532 ATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAGGT 1586 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || || || || || ||||||| ||| | ||||||| ||||| ||||||||| | Sbjct 1587 TTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTTGC 1646 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 155310 |||| |||| | | | |||||| | | ||| | | ||| |||||| || Sbjct 1647 CCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTGAG 1706 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 155370 ||||| ||| || || ||| || | || |||| ||| |||||||| || | || Sbjct 1707 TGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTCCC 1766 Query 155371 GTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 155430 | | ||| | |||| | ||| | | | || | |||||||| ||| | | | Sbjct 1767 ATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTTAA 1826 Query 155431 GCG-ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACA 155489 || |||||||| || || || ||||||| || | ||| | | ||| | ||||| Sbjct 1827 TCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAACA 1886 Query 155490 CAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCT 155549 ||| ||||||||||||| || ||| || | ||||| | || || ||||| || || || Sbjct 1887 CAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCCCT 1946 Query 155550 TTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCA 155609 ||| | ||||| | |||| |||| || ||| ||| | ||| | | || Sbjct 1947 ATTCAGTTCTATGAATATTTCAATGGTAAC-TCTAGTTCGATCAGGGAACCCATAGAAAG 2005 Query 155610 AGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGC 155669 || ||| || | ||||||| || || ||||| |||||||||||||| | || | Sbjct 2006 TGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATAACGTATC 2065 Query 155670 TGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC-AAGAA 155728 ||||||| || || || || |||||||| ||||| ||||||||||| | Sbjct 2066 CACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACTCTTATTC 2125 Query 155729 GTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTG 155788 || | || ||| |||| | ||| |||||||| || || |||| | || || | ||| Sbjct 2126 GT-TACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTTTAGGTA 2184 Query 155789 TGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTA 155848 | || ||||| || ||||| || | |||||| |||||||| |||| ||| ||| Sbjct 2185 TCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGTTGAC---- 2240 Query 155849 GTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAG 155908 ||||| || | || ||| | | ||| ||||||||||||| Sbjct 2241 -------AGTCA----------GGGTTATATAATTATCTGTGCTAACCTTGGTATGGAAG 2283 Query 155909 TAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 | ||||| || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 2284 TTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTATCTGCT 2330 >seq12053 Length=52445 Score = 134 bits (148), Expect = 2e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 ||||||||||| ||||| |||||||| || | |||||| | ||| | ||| | Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATCAGC 51418 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGT 155853 || ||||| |||||||| || ||||||| |||||||| |||||||| ||| | ||| Sbjct 51417 ACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGGGT 51358 Query 155854 AAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATG 155913 || || || ||||| || || | |||| ||| |||||||||||||| ||| Sbjct 51357 CGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTATG 51298 Query 155914 CACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 || || ||||| ||||| ||||||||||| ||| Sbjct 51297 CATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq22815 Length=10841 Score = 132 bits (146), Expect = 6e-26 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 |||||||| || || | || ||||| | || ||||| |||||||||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 ||||| | || |||| ||||| || || || || ||| ||||||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 ||||| || |||| | ||| | |||| ||||| | || ||| || | |||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | ||||| ||||| ||||||||||| || || || || || |||| || | || || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 | |||||||| ||||| || |||||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTC 8984 >seq7295 Length=63598 Score = 122 bits (134), Expect = 1e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 |||||||| || | || | | || || || || ||||| |||||||||||||| || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 ||||| | || |||| ||||| |||||||| || ||| ||||||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTCC 43957 Query 155572 TTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTAC 155631 ||||| || ||| | || | |||| || | | || ||| || | ||||| Sbjct 43958 TTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAA 44017 Query 155632 AAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGT 155691 | || | ||||||||||||||||| || ||||| || ||||||| || || || || Sbjct 44018 ATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACGA 44077 Query 155692 CTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 | ||||| || ||||| ||||||||||| Sbjct 44078 TTGATCTTACAATATGCTAGTTTCAACAACTC 44109 Score = 111 bits (122), Expect = 2e-19 Identities = 187/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 155453 GTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCC 155512 ||||||| || | ||| | || || ||||| || ||||| |||||||||||||| || | Sbjct 11017 GTACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTC 11076 Query 155513 ACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCAT 155572 | || | || || | ||||| ||| |||| || || | ||||||| ||| | Sbjct 11077 ATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCT 11136 Query 155573 TGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACA 155632 |||| || ||| | || | |||| || || | || ||| || | ||||||| Sbjct 11137 TGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACA 11196 Query 155633 AGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTC 155692 || | ||||| ||||||||||| || ||| | || ||||||| || || || || Sbjct 11197 GATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGAT 11256 Query 155693 TTATCTTCCAGTATGCATCCTTCAACAACTC 155723 | |||||||| ||||| ||||| ||||| Sbjct 11257 TGATCTTCCAATATGCTAGTTTCAAAAACTC 11287 >seq94 Length=189492 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 |||||||||| ||||| |||||||| || | |||||| || ||| | ||| | Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT-AGTGG 155852 || ||||| |||||||| || |||||||| |||||||| |||||||| || | |||| Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTG- 88090 Query 155853 TAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAAT 155912 | | || || || ||||| || || | ||||| ||| |||||||||||||| || Sbjct 88089 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTAT 88030 Query 155913 GCACGAGCGTA 155923 ||| || |||| Sbjct 88029 GCATGAACGTA 88019 Score = 89.7 bits (98), Expect = 6e-13 Identities = 272/429 (63%), Gaps = 65/429 (15%) Strand=Plus/Minus Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT-TTCTC 155555 ||||||||||| || |||||| | ||| || || || ||||| | |||| ||| Sbjct 81855 CTTATGCACCCATTTCACATGTT------AGCTGGGGTATTAGGTGGCT-TCTTATTCAG 81803 Query 155556 TGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTC 155615 ||||||||| |||| ||||| || ||| ||| | ||||| || || | || || Sbjct 81802 TGCTATGCATTGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCACAGA--ATGAATC 81745 Query 155616 TCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCA 155675 | || | |||||||| ||||| || || |||||||||||||| || | || ||||| Sbjct 81744 TGCTAATGAAGGTTACAAATTCGGTCA-GAGGAAGAAACTTATAATATCATAGCCGCTCA 81686 Query 155676 TGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCA 155735 || ||| | Sbjct 81685 GGGTTAC----------------------------------------------------A 81678 Query 155736 CTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAAC 155795 |||||||| ||||| |||||||| || | |||||| || ||| | ||| | || Sbjct 81677 CTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCAC 81618 Query 155796 GATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTA 155854 ||||| |||||||| || |||||||| |||||||| |||||||| || | ||| || Sbjct 81617 TATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT-GTC 81559 Query 155855 AAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGC 155914 | || || || ||||| || || | ||||| ||| |||||||| ||||| |||| Sbjct 81558 ATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTATGC 81499 Query 155915 ACGAGCGTA 155923 | || |||| Sbjct 81498 ATGAACGTA 81490 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/187 (71%), Gaps = 11/187 (6%) Strand=Plus/Minus Query 155497 CTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT-TTCTC 155555 ||||||||||| || |||||| | ||| || || || ||||| | |||| ||| Sbjct 88384 CTTATGCACCCATTTCACATGTT------AGCTGGGGTATTAGGTGGCT-TCTTATTCAG 88332 Query 155556 TGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTC 155615 ||||||||| |||| ||||| || ||| ||| | ||||| || || | || || Sbjct 88331 TGCTATGCATTGTTCCTTGGTAACTTCTAGTTCGATCAGGGAAACCACAGA--ATGAATC 88274 Query 155616 TCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCA 155675 | || | |||||||| ||||| || || |||||||||||||| || | || ||||| Sbjct 88273 TGCTAATGAAGGTTACAAATTCGGTCA-GAGGAAGAAACTTATAATATCATAGCCGCTCA 88215 Query 155676 TGGATAC 155682 || ||| Sbjct 88214 GGGTTAC 88208 >seq6413 Length=53986 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155498 TTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTG 155557 |||||||||| || ||||| | || |||| ||||| || || || || ||| || Sbjct 29192 TTATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTG 29133 Query 155558 CTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTC 155617 ||||||| | ||| ||||| || ||| | ||| | |||| || || | || ||| Sbjct 29132 CTATGCATGCTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTG 29073 Query 155618 AGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATG 155677 || | ||||||| ||||| ||||| ||||||||||| || || || || ||||||| Sbjct 29072 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATG 29013 Query 155678 GATACTTCGGTCGTCTTATCTTCCA 155702 || || || || | |||||||| Sbjct 29012 CTTATTTTGGCCGATTGATCTTCCA 28988 >seq24164 Length=10202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 ||||| |||| ||| |||||||| |||||||| || ||||||||||||| || | | Sbjct 3440 TCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCA 3499 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | | ||||| || |||||||| |||||||||||| || || ||| | | ||| Sbjct 3500 TGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAGATGTAT 3559 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCT 155559 | | || ||||| || || || ||| |||| Sbjct 3560 CTAGGGTATTCGGCGGCTCCCTATTCAGTGCT 3591 >seq8506 Length=47589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCA 155480 ||| ||||||| |||||||| || |||||||||||||| || | ||| | || ||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 155481 AGCAGAACACAATATCCTTATGCACCCCTT 155510 ||| |||||||| |||||||||||||| || Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq2793 Length=100609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || ||| | ||||| || |||||||||||||| ||||| || |||| Sbjct 12544 ACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTTATGCATGAACGTAWT 12603 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| ||||||||||| ||||| |||||| Sbjct 12604 GCTCATAACTTCCCTCTAGACCTAGCTGCT 12633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584494577358640