Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq20339 190 6e-44 seq12053 118 3e-22 seq8506 109 2e-19 seq22815 96.9 1e-15 seq24164 93.3 1e-14 seq94 89.7 1e-13 seq7295 87.8 5e-13 >seq20339 Length=39107 Score = 190 bits (210), Expect = 6e-44 Identities = 616/947 (65%), Gaps = 36/947 (4%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || || || ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 2330 AGCAGATAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2271 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 |||| || || || || | | ||| | | ||| ||| | Sbjct 2270 ---------GTTA---------GCACAGATA---ATTATATAACCCTGACTGTCAACTGC 2232 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || ||| |||| ||||||||||||||||| ||||| | | ||| Sbjct 2231 AGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGGGT 2172 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || | | || | | || || ||||| | || | ||| |||| || | ||||| Sbjct 2171 AAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTAACGAATAAGAGTTGTT 2112 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || || ||||| ||||| || | | |||| | ||||| Sbjct 2111 GAAACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATTATA 2052 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||| || Sbjct 2051 AGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGGTTC 1992 Query 40889 CCGAAT-GATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 || || || || ||| || | | ||||| | || | | || || | Sbjct 1991 CCTGATCGAACTAG--AGTTACCATTGAAATATTCATAGAACTGAATAGGGAGCCGCCGA 1934 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || |||| || | || || ||| ||||||| || ||||||||||| | || Sbjct 1933 ATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCCAAGA 1874 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | | || |||||| ||||| || | | || ||||| |||||||| || | | ||| Sbjct 1873 ATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAAAACTT 1814 Query 41068 CCT-GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGG-AGCTGTGTA 41125 ||| |||| | ||| | | |||||| | || | || |||| |||||| || || | Sbjct 1813 CCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTG-CAATGGGAGTTGAACA 1755 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| |||| ||| | ||| | |||| || | | ||| ||||||| | ||| Sbjct 1754 TGCAACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGACCCAT 1695 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| | |||||| | ||| ||||| | | ||| |||| ||| || | || ||||| Sbjct 1694 GTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCATTGTA 1635 Query 41246 TAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | |||| |||||||||||||||| ||||||| || |||| | Sbjct 1634 TAACCATTCATCAACGGATGCCT-CTTCCCAGATTGGGTAAAAATGTAAACCTATTGTGG 1576 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | || | | || | || || ||||| || || | | || | |||| Sbjct 1575 CAGAAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCTTGAAA 1521 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | ||| | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 1520 AAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAATAGTAAATA 1461 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCA 41470 || | || || || | ||||| | ||||| | |||| ||| || Sbjct 1460 CA-ATAGTTGCCGTAAATAATGTACGGATCATCAAAACACTAAAGCA 1415 >seq12053 Length=52445 Score = 118 bits (130), Expect = 3e-22 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 40537 AGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTC 40596 |||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || | Sbjct 51264 AGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAY 51323 Query 40597 TGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGT 40656 ||| | | |||||||||||| ||| || ||| | | ||| ||||| || |||| Sbjct 51324 GGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGATTGGT 51383 Query 40657 TAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATA 40716 | || | |||||||| ||||| ||||||||||| ||||| | | | ||| ||| | Sbjct 51384 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAGA 51443 Query 40717 TGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCAC 40758 | | | || || ||||| | || |||||||||| || || Sbjct 51444 TACGTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAAC 51485 >seq8506 Length=47589 Score = 109 bits (120), Expect = 2e-19 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 40974 AATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 ||||||||||| || ||||||||||| |||||||| |||| |||||| ||||| || ||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 41034 CTGATTCCTAAAGGCATACCATCAGAGAAA 41063 |||||||| ||||||||||||||| ||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAA 40169 >seq22815 Length=10841 Score = 96.9 bits (106), Expect = 1e-15 Identities = 207/307 (67%), Gaps = 5/307 (2%) Strand=Plus/Minus Query 40727 CGGGAAAGCACCAAGA-AAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAA 40785 ||||||| | |||| |||| ||||| || ||| ||||| || ||||||||| | Sbjct 9015 CGGGAAA---CAAAGAGAAGATGTGTA-CGAACGAGAGTTGTTRAAACTAGCATATTGGA 8960 Query 40786 ATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGAC 40845 | |||| || |||| ||| | || || |||||||| || ||||| || | || |||| Sbjct 8959 AGATTAATCGGCCAATATAAGCATGCGCGGCTACGATATTCTAAGTTTCTTCCTCTTGAC 8900 Query 40846 CAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAG 40905 | || | || || | || |||||| |||| ||| | |||| || | | |||| Sbjct 8899 CGAATCTGTAACCTTCATTAGCAGATTCATTTTCAGTGCTTTCCCTGATCAAACAAGAAG 8840 Query 40906 TAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGA 40965 | || | | | ||||||||| || | | || || || || || | ||| | Sbjct 8839 TTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCGCCTTTTACACCAGCTAGGCCTA 8780 Query 40966 GCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGA 41025 || || ||||||||||| || |||||||| || | ||||| |||| |||| |||| Sbjct 8779 AGATGTGAAATGGGTGCATAAGGATGTTGTGGTCATCCTGGAATACAATAATGACATTGA 8720 Query 41026 ATGTTCC 41032 | || || Sbjct 8719 AAGTACC 8713 >seq24164 Length=10202 Score = 93.3 bits (102), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 |||||| ||| |||||| || ||||||||||| || ||||| | || |||||| ||||| Sbjct 3549 CATATGAAATAAGTGCATAAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAA 3490 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 || ||| || ||||| ||||||| ||||||| ||| || | ||||| ||| Sbjct 3489 AGTACCAGAGACTCCTAGAGGCATAGCATCAGAAAAACTTCCTTAACCGATTGG 3436 >seq94 Length=189492 Score = 89.7 bits (98), Expect = 1e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40561 TACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAG 40620 |||| || ||||| ||||||||||| || | | ||| | | ||| |||||||| Sbjct 88019 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 88078 Query 40621 GAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAA 40680 ||| || | || | | || ||||| || ||||| || || |||||||| ||||| | Sbjct 88079 TAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGA 88138 Query 40681 AAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAA 40740 |||||||||| ||||| | | ||||| ||| || || | || || ||||| | Sbjct 88139 AAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTC 88198 Query 40741 GAAAGAAGTGTA 40752 | |||||||||| Sbjct 88199 GGAAGAAGTGTA 88210 Score = 86.0 bits (94), Expect = 2e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40561 TACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAG 40620 |||| || ||||| ||||| ||||| || | | ||| | | ||| |||||||| Sbjct 81490 TACGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 81549 Query 40621 GAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAA 40680 ||| || | || | | || ||||| || ||||| || || |||||||| ||||| | Sbjct 81550 TAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGA 81609 Query 40681 AAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAA 40740 |||||||||| ||||| | | ||||| ||| || || | || || ||||| | Sbjct 81610 AAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTC 81669 Query 40741 GAAAGAAGTGTA 40752 | |||||||||| Sbjct 81670 GGAAGAAGTGTA 81681 >seq7295 Length=63598 Score = 87.8 bits (96), Expect = 5e-13 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||| | || || ||||| || Sbjct 44106 TTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACAATA 44047 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 || ||||| || |||| ||| |||| | || || | || |||||| ||| ||| Sbjct 44046 TTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTTGTG 43987 Query 40884 GTCTCCCGAATGATTGAGGAAGTAAC-AAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 | |||| ||| | ||||| || |||| | ||||||||| || | | || Sbjct 43986 CTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTA-TGCATAGCACTGAATAGGGATCC 43928 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 ||| || || || | ||| | || || ||||||||||| || |||||||| || || Sbjct 43927 ACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 43868 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCC 41032 || || | || || ||| || || || || Sbjct 43867 CTGAAATAAAATCAGGAAATTCAAAGTACC 43838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143622888923196