Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq20339 255 7e-63 seq22815 154 2e-32 seq7295 152 6e-32 seq12053 136 4e-27 seq6413 113 5e-20 seq94 113 5e-20 seq24164 107 2e-18 seq6133 98.7 1e-15 seq8506 95.1 1e-14 >seq20339 Length=39107 Score = 255 bits (282), Expect = 7e-63 Identities = 595/892 (67%), Gaps = 34/892 (4%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 2330 AGCAGATAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2271 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAACG 67475 |||| || || || || | | ||| ||| |||||| Sbjct 2270 ---------GTTA---------GCACAGATA---ATTATATAACC--CTGACTGTCAACT 2234 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 | ||||||||||| |||||| | || ||||| || |||||||| | ||| | | Sbjct 2233 GCAGATTGGTTGAAATTGAAATCATTTAGGTTAAAAGCCATAGTGTTGATACCTAAAGGG 2174 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT-GAGTT 67594 || ||| |||| || || ||||| | ||| | |||| ||| || | || | ||||| Sbjct 2173 GTAAACTAGATACATACTACAGGCCAAGCAACTAGGATGAAATGTA-ACGAATAAGAGTT 2115 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||| | || || || || ||||||| | || | || Sbjct 2114 GTTGAAACTAGCATATTGGAAGATCCATCGGCCAAAATAACCATGAGTGGATACGTTATT 2055 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| || || ||||||| | || || || || | | Sbjct 2054 ATAAGTTTCTTCCTCTTGACCCAATCTGTAACCTTCATTAGCAGATTCACTTTCTATGGG 1995 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | ||| || || | ||| | ||||| ||| || || || || || Sbjct 1994 TTCCCTGATCGAACTAGA-GTTACCATTGAAATATTCATAGAACTGAATAGGGAGCCGCC 1936 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 |||||| || | ||||| | || || ||| ||||||||||||||||||| || | Sbjct 1935 GAATACCCCAACAACTCCTATCAAGTGAAATAGGTGCATAAGGATGTTGTGTTCATCCAA 1876 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCAT-TGCGTCAGAGAAAG 67893 ||| | | |||| | || ||||||| || | || |||||||| | | | | ||| Sbjct 1875 GAATAAAATCATGAAATTGAAAGTACTAGCGAATCCTAGAGGCATACGATTAAAAAAAAC 1816 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||| | || | || ||||| | |||| | || | | |||| || Sbjct 1815 TTCCTTGACCTATTGGGTTGATTAAGAAAAATGCGATAGTAGCTGCAATGGGAGTTGAAC 1756 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 |||| ||| ||| |||| || |||| ||| || || ||| ||||||| |||||| Sbjct 1755 ATGCAACAACAATCTAAGGTGGCGTACCCAGAGGGAAACTAAGATCCCACTCACGACCCA 1696 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTAT 68073 ||| | | ||| | | |||||| | | | |||| |||| | |||||| | Sbjct 1695 TGTAACAAGATACTCCAAGTAAGAAGTGTAGAAAAATTAGTTCATAAGGGCAACCATTGT 1636 Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGT 68133 | ||||| ||||| | | ||| |||||||||| || || || || | ||| |||| | Sbjct 1635 ATAACCATTCATCAACGGATGCCTCTTCCCAGATTGGGTAAAAATGTAAACCTATTGTGG 1576 Query 68134 TTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAA 68193 ||| |||| | || || |||| |||||||| || || | | || | || || Sbjct 1575 CAGAAGTAGGCAGAAGTGC-----AAATCATGTTGTTTCCATAAAGAATAGACCTTGAAA 1521 Query 68194 CAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAAT 68245 || ||| |||||||| || || |||||||| || |||| ||| ||||| Sbjct 1520 AAGTTTCATGAATACCATCAATGTCTACTGGAGGAGCAGCAAGGAAGGCAAT 1469 >seq22815 Length=10841 Score = 154 bits (170), Expect = 2e-32 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||| ||| ||||| |||||||| || || || | || |||| || || || Sbjct 8984 GAGTTGTTRAAACTAGCATATTGGAAGATTAATCGGCCAATATAAGCATGCGCGGCTACG 8925 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| ||||| ||||||| | || || || | ||| Sbjct 8924 ATATTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCA 8865 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || |||| ||||| | | ||||||| || | ||| | ||||||||||| || || || Sbjct 8864 GTGCTTTCCCTGATCAAACAAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAG 8805 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || || |||||| |||| || | || || ||||||||||||||||||||||| || Sbjct 8804 CCGCCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGGTCA 8745 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 | ||||| || | ||| || |||||||| Sbjct 8744 TCCTGGAATACAATAATGACATTGAAAGTACC 8713 >seq7295 Length=63598 Score = 152 bits (168), Expect = 6e-32 Identities = 197/272 (72%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| || |||||||| || || || || ||||||| || ||| Sbjct 44109 GAGTTGTTGAAACTAGCATATTGTAAGATCAATCGTCCAAAATAAGCATGAGCGGCTACA 44050 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||||||||| | || | ||||| | || || || | | Sbjct 44049 ATATTCTAAGTTTCTTCTTCTTGAACAAATATTTAACCTTCATTAGCAGATTCATTTTTT 43990 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || |||| || |||| | |||||| || | ||| ||||||||||| || || || Sbjct 43989 GTGCTTTCCCTAATAAAACTAGAAGTTACCAAGGAATTATGCATAGCACTGAATAGGGAT 43930 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 ||||| |||||| |||| || | || || |||||||||||||||||||||||||| Sbjct 43929 CCACCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 43870 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 || || || | | || | | || |||||||| Sbjct 43869 GCCTGAAATAAAATCAGGAAATTCAAAGTACC 43838 Score = 150 bits (166), Expect = 2e-31 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 ||||| |||||| ||||| ||||||||||| || || || || ||||||| || | | Sbjct 11287 GAGTTTTTGAAACTAGCATATTGGAAGATCAATCGTCCAAAATAAGCATGAGCGGCTATA 11228 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| | || ||||||| | || || || | || Sbjct 11227 ATATTCTAAGTTTCTTCCTCTTGAACAAATCTGTAACCTTCATTAGCAGATTCATTTTCT 11168 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || |||| || || | | |||||| || | ||| ||||||| ||| || || || Sbjct 11167 GTGCTTTCCCTAATCAAACTAGAAGTTACCAAGGAATTATGCATAGAACTTAATAGGGAT 11108 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 | ||| |||||| | || || | ||||| |||||||||||||||||||||||||| Sbjct 11107 CAACCTTTTACACCAGTTAGGCCTATGATATGAAATGGGTGCATAAGGATGTTGTGCTCA 11048 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTAC 67860 ||||| || || | |||| | || ||||||| Sbjct 11047 GCTTGAAATACAATCATGAAATTGAAAGTAC 11017 >seq12053 Length=52445 Score = 136 bits (150), Expect = 4e-27 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 67367 GTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCT 67426 ||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 51265 GTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCAYG 51324 Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAACGACGGATTGG 67484 ||| | ||| || |||||||| ||| || ||| ||| |||||| || |||||| Sbjct 51325 GTTGATGATATCAGCCCAAGTGTTAATTACACGACC--CTGACTGTCAACTACAGATTGG 51382 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 ||||| ||||||| || |||||||| |||||||| | ||| | || | |||||| Sbjct 51383 TTGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAG 51442 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG 67579 || | || ||||| | ||||| ||||||||||| Sbjct 51443 ATACGTACTACAGGCCAAGCAGCTAGGAAGAAGTG 51477 >seq6413 Length=53986 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 ||||||||||| || || || || ||||||| || || || || ||||| ||||| ||| Sbjct 28988 TGGAAGATCAATCGGCCAAAATAAGCATGAGCGGCTACGATATTCTAAGTTTCTTCCTCT 29047 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || ||||| ||||||| | || || || | || || |||| ||||| | | | Sbjct 29048 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGCTTTCCCTGATCAAACTA 29107 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||||| || | ||| | ||||||||||| || || || || || |||||| |||| Sbjct 29108 GAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCGCCTTTTACACCAGCTAGG 29167 Query 67791 CCAAGCATATGGAATGGGTGCATAA 67815 || | || || ||||||||||||| Sbjct 29168 CCTAAGATGTGAAATGGGTGCATAA 29192 >seq94 Length=189492 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 67390 TACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAG 67449 |||| || |||||||||||||| ||||| || | ||| | ||| || |||||||| Sbjct 88019 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 88078 Query 67450 GAATCACTTTACCACCTGCG-TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTG 67508 ||| || | || || | ||||| || ||||||||||| |||||||| || |||||| Sbjct 88079 TAATTACATGAC-ACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 88137 Query 67509 AATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCA 67568 || |||||||| | ||| | || || |||||||| | || ||||| | ||||| Sbjct 88138 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 88197 Query 67569 AGGAAGAAGTG 67579 |||||||||| Sbjct 88198 CGGAAGAAGTG 88208 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 67390 TACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAG 67449 |||| || ||||||||||| || ||||| || | ||| | ||| || |||||||| Sbjct 81490 TACGTTCATGCATAACTTCAATACCAAGGTTAGCACGGTTGATGATATCGGCCCAAGTGT 81549 Query 67450 GAATCACTTTACCACCTGCG-TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTG 67508 ||| || | || || | ||||| || ||||||||||| |||||||| || |||||| Sbjct 81550 TAATTACATGAC-ACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTG 81608 Query 67509 AATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCA 67568 || |||||||| | ||| | || || |||||||| | || ||||| | ||||| Sbjct 81609 AAAGCCATAGTGCTGATACCTAAAGCGGTAAACCAGATACCTACTACAGGCCAAGCAGCT 81668 Query 67569 AGGAAGAAGTG 67579 |||||||||| Sbjct 81669 CGGAAGAAGTG 81679 >seq24164 Length=10202 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 67754 AGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCAT 67813 |||||| || || || || |||||||| | | ||| | | |||||| ||| |||||| Sbjct 3591 AGCACTGAATAGGGAGCCGCCGAATACCCTAGATACATCTAACATATGAAATAAGTGCAT 3532 Query 67814 AAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAG 67873 |||||||||||| || || ||||| | | |||| | || ||||||||||| | || || Sbjct 3531 AAGGATGTTGTGTTCAGCCTGGAATATAATCATGAAATTGAAAGTACCAGAGACTCCTAG 3472 Query 67874 AGGCATTGCGTCAGAGAAAGAACCTTGACCGA 67905 |||||| || ||||| ||| |||| ||||| Sbjct 3471 AGGCATAGCATCAGAAAAACTTCCTTAACCGA 3440 >seq6133 Length=71616 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| ||||| || |||||||| | || || || || ||||| | Sbjct 57160 GAGTTGTTGAAACTAGCATATTGAAAGATCAATTGGCCAAAATAAGAATATGCAGCTAGG 57101 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || || | ||||| ||||| ||||| ||||||| | || | || | || Sbjct 57100 ATATTCTATATTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAAATTCATTTTCT 57041 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAA-CAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 || |||| || ||| | |||||| | |||| ||| | |||| || | || || || Sbjct 57040 GTGCTTTCCCTTATATAACTAGAAGTTATCAAG-GAAGCATGCAATACAATTAATAGGGA 56982 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 | ||| ||||| |||| | | || || |||||||||||||||||||||| ||| Sbjct 56981 GACGCCGTTTACACAAGCTAGGACTAAGATGTGAAATGGGTGCATAAGGATGTTGTACTC 56922 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 || ||||| | | |||| | || ||||||| Sbjct 56921 AGCCTGGAATAGAATCATGAAATTGGAAGTACC 56889 >seq8506 Length=47589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 ||||||||||||||||||||||| || |||||||| || | |||| | || ||||||||| Sbjct 40080 AATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACAATCATGAAATTGAAAGTACCA 40139 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 || || || |||||||| | ||||| ||| Sbjct 40140 GAGATTCCTAGAGGCATACCATCAGAAAAA 40169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566616995777040