Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11273 141 2e-28 seq21138 102 1e-16 seq5748 98.7 2e-15 seq8951 84.2 4e-11 seq3330 84.2 4e-11 >seq11273 Length=79338 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| |||| |||||| || ||||| || |||| |||||| |||||| Sbjct 31971 ATTTGCATGCCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTG 31912 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | ||| || |||||||| || | |||||| || Sbjct 31911 TAGTCAGCCAGGGTCCTTCCATCCTCGAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGG 31852 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| ||||| || ||||||| || | || ||||||||||||| Sbjct 31851 TCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCACGTTGTCAATAGTATCGGAA 31792 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || || || ||||| || ||||| Sbjct 31791 CTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 31736 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | ||||| || || |||| || | ||||| ||| || Sbjct 32199 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 32140 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | ||||| || ||| || | ||| ||||| ||||| || |||||||| || Sbjct 32139 TAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 32080 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || ||||| || || | ||| | ||| |||||||| ||| Sbjct 32079 TCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAA 32020 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || ||||| | || || |||||||||||||| Sbjct 32019 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 31964 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | || || || | |||| || | || ||| ||| || Sbjct 22190 ATTTGCATGCCACCTCTAAGACGTAGAACAACGTGCAGGGTTGACTGTTTCTGAATGTTG 22249 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | ||| | ||| ||||| || |||||||| || Sbjct 22250 TAATCTGCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGG 22309 Query 193245 TCAGGAGGTATTCCTTC-TTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 | ||||| || || || ||| ||||| || || | ||| | ||| |||||||| || Sbjct 22310 TTTGGAGGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGA 22369 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 | |||||| || | ||| || || || ||||| | || || ||||||||||||| Sbjct 22370 ACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCA 22425 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 31653 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 31594 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| || || || ||| || || ||||||||||| || || Sbjct 31593 TTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 31534 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 31533 GTCAGAGTTTTAACAAAGATTTGCAT 31508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||||| || || || || || ||||| || |||| ||| Sbjct 22736 TGATTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTCAATT 22795 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| || || || ||| || || ||||||||||| || || Sbjct 22796 TTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 22855 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 22856 GTCAGAGTTTTAACAAAGATTTGCATT 22882 >seq21138 Length=28562 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 12993 ACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 13052 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 13053 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 13112 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 13113 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAAC 13172 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 13173 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13223 >seq5748 Length=24579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | ||||| ||| || |||||| || || | | || | ||| | Sbjct 10212 ACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCATCCTTA 10271 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| |||| | |||||| |||||||| | || ||||||||||| |||| Sbjct 10272 AATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTGTCTTCA 10331 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| || | |||| || || || ||||| || || || Sbjct 10332 ATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAATGGTCTTT 10391 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| ||||| |||||||| Sbjct 10392 CCAATGAGAGTTTTAACAAAGATTTGCAT 10420 >seq8951 Length=56096 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||||| ||| || ||||||||||| |||||||| | |||||| ||||| |||||||| Sbjct 33857 GTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCCGGAGGTATG 33798 Query 193257 CCTTCTTTATCTTG 193270 ||||||||||| || Sbjct 33797 CCTTCTTTATCCTG 33784 >seq3330 Length=13059 Score = 84.2 bits (92), Expect = 4e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | || || || || ||||| ||||||||||| |||||||| Sbjct 3935 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 3876 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || ||| ||||||| | | || ||||| ||||| || |||||| || Sbjct 3875 TTGGCCTTAGCATTCTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGTTTTA-CT 3817 Query 193335 GTTAGCGTTTTTACAAATAT-TTGC 193358 | ||| ||||| || ||||| |||| Sbjct 3816 GGTAGAGTTTTCACGAATATCTTGC 3792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899130418786080