Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11273 98.7 1e-15 seq8314 95.1 2e-14 seq4177 95.1 2e-14 >seq11273 Length=79338 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || ||||| || || || || ||| Sbjct 31964 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 32023 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| || || || || |||||||| || Sbjct 32024 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 32083 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || ||||| || || ||| || || || ||||||| || Sbjct 32084 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 32143 Query 156003 AT 156004 || Sbjct 32144 AT 32145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||||| || || || ||| Sbjct 32648 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 32707 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| || ||||| || || ||||| || || ||||| ||| Sbjct 32708 GATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAA 32767 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| ||||| Sbjct 32768 CAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAAC 32827 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | || |||||| Sbjct 32828 ATCCAGAAAGAGTCTACTCTTCAT 32851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 155824 TGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTG 155883 ||||||||||| |||| |||||||| || || || ||||| || || || || ||| | Sbjct 22425 TGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCAG 22366 Query 155884 ATAATATTTTAAACGTGAAAAATAAAATACAAGATAAA-GAAGGCATACCTCCAGAACAA 155942 ||| ||| || || ||| || || ||||| ||| || || || |||||| | || Sbjct 22365 ATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAAGGAGGGTATTCCTCCAAACCAG 22306 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || |||| || |||||| || || || ||||||| || Sbjct 22305 CAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAAC 22246 Query 156003 AT 156004 || Sbjct 22245 AT 22244 >seq8314 Length=67656 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||| || || |||||||| || || || || Sbjct 25766 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTGGAGGTAGAGTCA 25825 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| || |||||||| || ||||| Sbjct 25826 TCAGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 25885 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || ||||||||| ||||||||||||||||| ||| | |||| || | || || Sbjct 25886 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTAC 25945 Query 156000 AATAT 156004 || || Sbjct 25946 AACAT 25950 >seq4177 Length=96264 Score = 95.1 bits (104), Expect = 2e-14 Identities = 351/549 (64%), Gaps = 5/549 (1%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| ||| |||||||| ||||| || ||||| || || || ||| Sbjct 66964 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 66905 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | |||||||||||| ||| || | ||| Sbjct 66904 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 66845 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || || ||||| || || || || | || | || || ||| | || | | Sbjct 66844 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGT---TTCAGACCCA 66788 Query 18335 AGTATCCATTTTTGTGCCCA-TTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 ||||| | ||||| ||| |||| | ||| || || |||| || || Sbjct 66787 TCGATCCAACGAAGGGCCCATTTCGCCTT-CTTTTCAACACAAGGGATTGTCTCAATTGC 66729 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | ||||| | ||||| | ||||| || || || | || | | |||| || Sbjct 66728 ACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTA 66669 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||| || ||||| || | || || || || || || | ||| || | | |||||||| Sbjct 66668 CATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGC 66609 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | || | || | || ||| | | | ||||| |||||| ||||| | | Sbjct 66608 AACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGC 66549 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 || ||||| || | ||||| | |||||||| ||||| | || || | ||| Sbjct 66548 GGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCA 66489 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 | | |||| | || ||||| |||||||| ||||| ||||||| ||| | Sbjct 66488 GTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTT 66429 Query 18694 TTTGTACAT 18702 |||||||| Sbjct 66428 CTTGTACAT 66420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731445739450400