Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11273 127 4e-24 seq5748 107 4e-18 seq1518 95.1 2e-14 seq8314 87.8 4e-12 seq3330 86.0 1e-11 >seq11273 Length=79338 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | |||| |||||| ||| || |||||| Sbjct 31509 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 31450 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | |||||| ||||| || Sbjct 31449 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 31390 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 31389 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 31330 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | ||| |||| |||||||||||| Sbjct 31329 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 31280 Score = 104 bits (114), Expect = 5e-17 Identities = 134/184 (73%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||||| | |||| | |||| || | ||||| ||||||||||| | || Sbjct 22926 GATGTTGTAATCAGCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCT 22985 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| || ||||| || ||| |||||||||| ||| Sbjct 22986 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAGTAGT 23045 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT-TTTAATAAATATCT 192532 || || || || || ||||| ||||| || || || | ||| || || |||||||| Sbjct 23046 GTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAAACAAATATCT 23105 Query 192533 GCAT 192536 |||| Sbjct 23106 GCAT 23109 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || | || | || | ||| || ||| || |||||| Sbjct 31737 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 31678 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 31677 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 31618 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| |||||| || | ||||| || Sbjct 31617 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCG 31558 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || || | ||||||| ||| || ||||| Sbjct 31557 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 31508 Score = 100 bits (110), Expect = 6e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||||| || | || | || | || ||| || || ||||| Sbjct 22196 ATGCCACCTCTAAGACGTAGAACAACGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 22255 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| | |||||||| || |||||||| || | || Sbjct 22256 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 22315 Query 192427 GGTAT-TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||| |||| ||||| || || ||| ||||| | |||| |||||| || Sbjct 22316 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 22375 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCA 192535 || || | |||||| || || || || ||||| |||| |||||| |||| Sbjct 22376 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCA 22425 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| || | || | || | || | ||||| || || ||||| Sbjct 32193 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 32134 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || ||||||||||| |||||||| || || || Sbjct 32133 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 32074 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| |||| |||||| || Sbjct 32073 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 32014 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| || || || || ||||| || | |||||| ||||| Sbjct 32013 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 31964 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || | || | || | ||| || ||| || |||||| Sbjct 22652 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 22711 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||||| |||| || | || || ||||||||||| | ||||| || || || Sbjct 22712 GCAACTGTTCGGCCATCTTCAAGATGATTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 22771 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || |||| |||||| ||| |||||| || | ||||| || Sbjct 22772 GGAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCG 22831 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| || || || || || | ||||||| ||| || |||||| Sbjct 22832 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCATT 22882 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||||| |||||| ||| ||||| || | | || || |||| || | || Sbjct 32851 ATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTG 32792 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||||| | ||||||||||| ||||| || ||||| || || ||||| || Sbjct 32791 CTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTT 32732 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| |||| ||| || || || || | || || || || ||||| Sbjct 32731 TGCTTTCACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGT 32672 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 32671 CAGAGTCTTCACAAAGATCTGCAT 32648 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| || || | ||| | ||| | ||| || ||| || || || Sbjct 32649 ATCCCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 32590 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | |||||||||||||||||| || | |||||| || || Sbjct 32589 GCAAGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGG 32530 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | |||||| || Sbjct 32529 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCA 32470 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || ||||| || || || | ||| |||||||| Sbjct 32469 ACCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 >seq5748 Length=24579 Score = 107 bits (118), Expect = 4e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||||| || || | ||| | |||| ||| ||| || ||||| ||||||| Sbjct 10193 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGA-ATATTGTAATCAG 10251 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||| | ||||| | |||||||| ||| |||| | |||||| |||||||| | | Sbjct 10252 CAAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGG 10311 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGATTCT 192486 | ||||||||||| |||| || || ||| ||||| | || | | | || ||| Sbjct 10312 GAATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTC- 10370 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||| | | ||||||| ||| || ||||| Sbjct 10371 ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 10420 >seq1518 Length=20725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || ||| |||| || | || || || || ||||| |||| | Sbjct 13836 ATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGC 13777 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || ||||| || ||| ||| ||||| |||| Sbjct 13776 TGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTG 13717 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||||| ||||| || || || || || || || | ||||| | || |||||| Sbjct 13716 TCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGC 13657 Query 192535 ATTTT 192539 ||||| Sbjct 13656 ATTTT 13652 >seq8314 Length=67656 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || |||| || ||||| |||| || | || ||||| || || || |||| Sbjct 25951 GATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCG 25892 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || ||||| || ||||| || ||| || ||||| || | Sbjct 25891 CTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGT 25832 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| || | ||||| || || || || | || || | ||| ||||| Sbjct 25831 GTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 25772 Query 192534 CATTTT 192539 |||||| Sbjct 25771 CATTTT 25766 >seq3330 Length=13059 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/165 (73%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| || | || ||||||||||| || | || || || || || || Sbjct 3956 AAGGTGCGTCCATCCTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGG 3897 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAAT--CTGACGATTCTA 192487 ||||||||||| |||||||| || || |||| |||| || |||| |||| | Sbjct 3896 ATTCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTCTCGATAGTATTGCTGA--ATTCGA 3839 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 |||| ||||||||||||||| | | || ||||| | ||||||| Sbjct 3838 CTTCCAGAGTAATGGTTTTA-CTGGTAGAGTTTTCACGAATATCT 3795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983892279591900