Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq11273 100 5e-16 seq3330 98.7 2e-15 seq1518 96.9 6e-15 seq30 89.7 9e-13 seq8314 84.2 4e-11 >seq11273 Length=79338 Score = 100 bits (110), Expect = 5e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| |||| || | || | || | || ||| ||| || |||||| Sbjct 22196 ATGCCACCTCTAAGACGTAGAACAACGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCT 22255 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| | |||||||| || |||||||| |||| || Sbjct 22256 GCCAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGA 22315 Query 171960 GGTATTCCTTC-TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || ||| ||||| || || ||| ||||| | ||||||||||| || Sbjct 22316 GGAATACCCTCCTTTGTCTTGGATCTTTGCTTTAACATTGTTGATAGTATCTGAACTCTC 22375 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 || || | |||||| || || || || ||||| |||| ||||| |||| Sbjct 22376 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCA 22425 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || |||||| Sbjct 32193 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCT 32134 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 32133 GCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 32074 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| ||||||||||| || Sbjct 32073 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 32014 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| || | ||||| ||||| Sbjct 32013 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 31964 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | |||| |||||| || || ||||| Sbjct 31509 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 31450 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||| |||||||| || | |||||| || || || Sbjct 31449 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 31390 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| |||||| || || || || || Sbjct 31389 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 31330 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | ||| |||| ||||||||||| Sbjct 31329 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 31280 >seq3330 Length=13059 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || ||||||||||| |||||||| Sbjct 3935 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 3876 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| ||||||| |||| |||| ||||| ||||||||||||||| Sbjct 3875 TTGGCCTTAGCATTCTCGATAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTA- 3819 Query 172042 CAGTTAATGTTTTAATGAATATCT 172065 | | || ||||| | |||||||| Sbjct 3818 CTGGTAGAGTTTTCACGAATATCT 3795 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/132 (77%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 171943 ATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA 172002 |||| || ||||| || || || |||||||| |||||||| || || |||| | Sbjct 3798 ATCT-TGCTGGTCTGGAGGGATCCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGA 3740 Query 172003 TAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||||| |||| |||| ||||| |||||||||||||||| || | ||||| ||||| Sbjct 3739 TAGTATTGCTGA--ATTCGACTTCCAGAGTAATGGTTTTACTGGTCAGAGTTTTCATGAA 3682 Query 172061 TATCTGCATTTT 172072 |||||||||||| Sbjct 3681 TATCTGCATTTT 3670 >seq1518 Length=20725 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 13837 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 13778 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 13777 CTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 13718 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 13717 GTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 13658 Query 172067 CATTTT 172072 |||||| Sbjct 13657 CATTTT 13652 >seq30 Length=32432 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | ||| | | | | || ||||| || || ||||||||||| || || Sbjct 396 AATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCT 337 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || || ||||| || || || || ||||| || || || Sbjct 336 TTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTGTCAATGGT 277 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||| || || || ||||| || || ||||| || || || | ||| || || Sbjct 276 GTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 217 Query 172067 CATT 172070 |||| Sbjct 216 CATT 213 >seq8314 Length=67656 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||| || ||||| |||| ||| ||||| ||||| || ||||| || ||||| || Sbjct 25914 TGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATC 25855 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || || ||||| || ||||| || | ||||| || || || Sbjct 25854 TTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCC 25795 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || || | || ||||||||||| Sbjct 25794 GTCAGGGTCTTCACAAAGATCTGCATTTT 25766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904608826165200