Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4177 113 6e-19 seq828 91.5 2e-12 >seq4177 Length=96264 Score = 113 bits (124), Expect = 6e-19 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | |||| || || ||| Sbjct 66661 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGG 66602 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| || |||||||| |||||| ||| Sbjct 66601 ACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGCGGCAAAA 66542 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || || || |||| || || | || || | || ||||||| ||| Sbjct 66541 AAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG-ACG 66483 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || |||| | ||| || || || || | ||||||| || ||| ||| || ||||| Sbjct 66482 AGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTA 66423 Query 869872 CATCTCCCA 869880 ||||||||| Sbjct 66422 CATCTCCCA 66414 >seq828 Length=5939 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| | |||||| |||||| ||||| || || ||||||| || Sbjct 1213 GCGGCTAACTACCTGAATATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTGGCAGAC 1154 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | || |||||||| || ||||| |||||||||||| ||| Sbjct 1153 ATGATCAAAGGAAAGACTCCGGAGGAGATTCGAAAGACTTTTAACATCAAGAACG 1099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103315478160298