Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11273 93.3 3e-14 seq8951 89.7 4e-13 >seq11273 Length=79338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110266 ATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||| | ||||| |||||||| || || | ||||| || ||||| || | || || Sbjct 31273 ATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGA 31332 Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385 | | || || | | | || ||| |||||| ||||| |||||| | || Sbjct 31333 GAGTTCTGACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCC 31392 Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 ||||| || ||||| || | ||| || |||||||| || |||| | ||||| | || || Sbjct 31393 AGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGA 31452 Query 110446 TTACAACATTCAAAAAGAATCTAC 110469 ||||||||| |||||||| ||||| Sbjct 31453 TTACAACATCCAAAAAGAGTCTAC 31476 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| || || || || || || ||||| | || ||| | Sbjct 31964 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 32023 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | || ||| ||||| ||||| || || | || || || Sbjct 32024 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 32083 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||| ||||||||| Sbjct 32084 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 32143 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 32144 ATTCAGAAAGAATCAACCCTGCAC 32167 >seq8951 Length=56096 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 || ||||||||| | || |||||| || ||||| |||| ||| || ||||| |||| Sbjct 33787 GATAAAGAAGGCATACCTCCGGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 33846 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 |||| ||||| |||| |||||||||||||| |||||||| || Sbjct 33847 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAAC 33890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412607161962842