Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11273 95.1 1e-14 seq30 89.7 4e-13 seq2718 84.2 2e-11 >seq11273 Length=79338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || ||| | Sbjct 32192 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 32251 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | ||| || || Sbjct 32252 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 32311 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||| || ||||||| | || | || ||||||||| Sbjct 32312 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 32371 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | || |||||||| | ||| |||| || Sbjct 32372 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 >seq30 Length=32432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || |||| | Sbjct 442 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCT 501 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || || | || || ||| Sbjct 502 GATACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 561 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || || || || || | | || |||||||||||||| Sbjct 562 CAGAGACTGATCTTTGCAGGGAAGCAACTTGAAGATGGAAGGACTCTGGCGGACTACAAC 621 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 622 ATCCAAAAGGAGTCTACTTTGCAC 645 >seq2718 Length=65933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || ||| | || || |||||||| ||| | || ||| ||| Sbjct 44974 ATGCAGATCTTTGTTAAGACTCTTACCGGGAAAACCATCACCCTGGAGGTTGAGAGCTC- 45032 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || || || | ||| || || Sbjct 45033 CGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCA 45092 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| ||||| | | || |||||||||| || Sbjct 45093 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTTTGGCGGACTATAA 45152 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| ||||||||||| || ||||| ||||| | || || | || |||| Sbjct 45153 CATCCAAAAGGAGTCGACCCTGCACTTGGTGCTTAGGCTGAGGGGAGGAA 45202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398650292075266