Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2718 123 2e-23 seq21138 111 2e-19 seq8314 109 5e-19 seq29 105 6e-18 seq8313 104 2e-17 seq11273 93.3 4e-14 seq1518 89.7 5e-13 >seq2718 Length=65933 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || || || || ||| ||| | | | |||||||| Sbjct 45179 AAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCA-TCCTCGAG 45121 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || ||||||||| || ||||| || |||||||| ||| Sbjct 45120 CTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCTTGGAT 45061 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||||| | ||| || || | ||||| |||||| || Sbjct 45060 CTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTCCC 45001 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || || |||||||| Sbjct 45000 GGTAAGAGTCTTAACAAAGATCTGCAT 44974 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | | ||| | | | |||||||||||||| | Sbjct 44943 GGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 44885 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || ||||||||| || || || || |||||||| |||||| || Sbjct 44884 CAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCT 44825 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| | ||||| || | |||| || || ||||| || | Sbjct 44824 TAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGGG 44765 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 44764 TCTTAACAAAAATCTGCAT 44746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||| ||||| ||||| || |||||||| | | || ||| |||||| | Sbjct 44267 AAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGT--ACGTCCGTCCTCCA 44210 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || ||| | || |||| ||||| || || || || ||||||||||| || Sbjct 44209 ACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGA 44150 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | || || | ||||| || | ||||| || || | Sbjct 44149 TCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTC 44090 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || || |||||||| Sbjct 44089 CGGTGAGAGTTTTCACAAAGATCTGCAT 44062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| || ||||| || | | ||| | | | || || | Sbjct 44495 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCA-TCTTCCAA 44437 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || ||||||||| || || ||||||||||| || ||| Sbjct 44436 CTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 44377 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | | || || || | ||| | || || || Sbjct 44376 CTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACC 44317 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 44316 CGTAAGAGTCTTCACGAAGATCTGCAT 44290 >seq21138 Length=28562 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | | || ||| | ||||| |||||||| || Sbjct 13024 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCA-TCCTCAAGCTGCTTTCC 13082 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || || || ||||||||||| |||||| || Sbjct 13083 GGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTT 13142 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | ||| || || | ||||| || || || || || || Sbjct 13143 GACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGT 13202 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 13203 TTTCACGAAGATCTGCAT 13220 >seq8314 Length=67656 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | | ||| | | | |||||||||||||| | Sbjct 25966 GGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCGAGCTGCTTAC 25908 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | ||||||||||| || || |||||||||||||| ||||| || Sbjct 25907 CGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCT 25848 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| ||||| | Sbjct 25847 TAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATAGTCTTGCCCGTCAGGG 25788 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 25787 TCTTCACAAAGATCTGCAT 25769 >seq29 Length=28306 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || |||||||| | | || |||||| ||| Sbjct 28147 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGC 28088 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||||||||| | || | || |||||||| || || |||||||||||||| |||| Sbjct 28087 TGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATC 28028 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| ||||| | | || || || | ||||| ||| || || Sbjct 28027 TTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCT 27968 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||| ||||| Sbjct 27967 GTCAAAGTTTTCACGAAAATTTGCAT 27942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || |||||||| | | || ||| ||| || |||||||| | Sbjct 27910 GTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGT--ACGGCCGTCTTCAAGCTGCTTTC 27853 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||||||||| |||| || ||| Sbjct 27852 CTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATC-TTGGCT 27794 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | |||| ||||| | | ||||| || | ||||| || || || || || Sbjct 27793 TTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGG 27734 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||| Sbjct 27733 GTTTTAACAAATATCTGCAT 27714 >seq8313 Length=21892 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || | | ||| | | | ||||| |||||||| | Sbjct 1345 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCA-TCCTCAAGCTGCTTTC 1403 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||||| |||| | |||||||||||| || || |||||||||||||| ||||| || Sbjct 1404 CCGCGAAAATCAACCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCT 1463 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | ||| | || ||||| || || | Sbjct 1464 TAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGG 1523 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1524 TCTTCACAAAGATCTGCAT 1542 >seq11273 Length=79338 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||||||||| |||||||| || ||| || |||||||| || Sbjct 31939 ATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCGAGTTG 31880 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || | ||||||||| ||||| || |||||||| || ||| || Sbjct 31879 CTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATC-CTGAATTT 31821 Query 133577 TTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | ||| | | |||| || |||| || || || | ||||| ||| || || | Sbjct 31820 TGGCCTTCACGTTGTCAATAGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAG 31761 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 31760 TAAGTGTCTTGACAAAGATCTGCAT 31736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || || || | | ||| | | | ||||| |||||||| || Sbjct 32844 GTAGACTCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCA-TCCTCAAGCTGCTTACC 32786 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||| || || || ||||| ||||||||||| |||||| || Sbjct 32785 AGCAAAGATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTT 32726 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| || | |||| || || || |||||||| Sbjct 32725 CACATTGTCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGT 32666 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 32665 CTTCACAAAGATCTGCAT 32648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || |||||||| | | || | | | || || ||||| || | Sbjct 31705 GGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCA-TCTTCAAGCTGTTTCC 31647 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || || ||||||||||| ||| ||| ||| Sbjct 31646 CAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCT 31588 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | |||| ||||| | | ||| || || | || | || || ||||||||| Sbjct 31587 TTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGA 31528 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| Sbjct 31527 GTTTTAACAAAGATTTGCAT 31508 >seq1518 Length=20725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || |||||||| | | || | | | || ||||||||||| || ||| | Sbjct 13844 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCGAAG 13786 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || | ||||||||||| || || || ||||||||||| ||||| |||| | Sbjct 13785 ATCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 13726 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| | | || || || | |||| || || || || |||||||| ||| Sbjct 13725 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 13666 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 13665 AAGATCTGCAT 13655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483139243640560