Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1518 122 6e-23 seq21138 120 2e-22 seq11273 109 4e-19 seq30 98.7 7e-16 seq2718 95.1 8e-15 seq29 95.1 8e-15 seq8314 84.2 1e-11 seq8313 84.2 1e-11 >seq1518 Length=20725 Score = 122 bits (134), Expect = 6e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||| | || || ||| | || || | || |||||||| || | Sbjct 13844 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 13785 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| |||||||| ||| | || | |||||| ||||| ||| || | || |||| | Sbjct 13784 TCAATCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTT-AGCTTTGACATTG 13726 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||||| ||||| || |||| ||||||||| || || || | ||||| || Sbjct 13725 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 13666 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 13665 AAGATCTGCAT 13655 >seq21138 Length=28562 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| | ||| |||||| ||| || || |||||||| |||| Sbjct 12992 CACCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 13051 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || |||||||| ||||||||||||||||| ||| | | Sbjct 13052 CAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGG 13111 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || | || |||| ||| | ||||||| || || Sbjct 13112 GAATCCCTTCCTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTGTCGGAAGACTCA 13170 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 13171 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13220 >seq11273 Length=79338 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| ||||||| ||| ||||| ||| || || |||||||| || | Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32587 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||| || ||||| ||||||||||| || ||| | || Sbjct 32586 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32527 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||| || || || |||| ||| | ||| || ||| || Sbjct 32526 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATGGTATC---TGAACTCTC 32471 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || |||||||||||||| Sbjct 32470 AACCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| ||||||| ||| ||||| ||| || || |||||||| || | Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32359 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | |||||| || ||||| ||||||||||| || ||| | || Sbjct 32358 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32299 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||| || || || |||| ||| | ||| || ||| || Sbjct 32298 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATGGTATC---TGAACTCTC 32243 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || || || || ||||| || ||||| Sbjct 32242 AACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 32192 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| ||||||||||| | ||||| || | || || | ||| Sbjct 31710 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 31651 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| | |||||| ||| | || | |||||| ||||| |||||| Sbjct 31650 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT- 31592 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 | || |||| || | |||||| ||| || || |||| || || || || || Sbjct 31591 AGCTTTGACATTATCAATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCC 31535 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| ||||| Sbjct 31534 GGTCAGAGTTTTAACAAAGATTTGCAT 31508 >seq30 Length=32432 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 212 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 153 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | ||| ||||||||||| ||||| | ||||| ||| | || Sbjct 152 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCTGGAGGA 93 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| | | ||||| ||| | |||||| |||||| Sbjct 92 ATACCTTCTTTGTCCTGAATTTT-GGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 34 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 |||| ||||| || || || || || || || Sbjct 33 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTT 1 >seq2718 Length=65933 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| ||| || || |||||||| || | Sbjct 44517 ACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 44458 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| || ||||| ||||| ||||| | |||||| ||| | || Sbjct 44457 TAGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 44398 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGA---TT 33697 | ||||| || || || || || | | | |||| |||||| ||| || Sbjct 44397 AATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTC---TGAGCTTT 44342 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| || ||||| ||||| || | || || || |||||||||||| Sbjct 44341 CGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCATA 44289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||| || || ||||||||||| | Sbjct 44289 ACCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 44230 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| ||||| || |||||||| || |||| | |||||||| | || Sbjct 44229 TAGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGG 44170 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | ||| | ||| | || || ||||| Sbjct 44169 AATCCCTTCCTTGTCCTGGATCTT-AGCCTTAACGTTGTCGATTGTATCAGAACTTTCCA 44111 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| |||||||||||||| Sbjct 44110 CCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 >seq29 Length=28306 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || ||||| ||| || || ||||||||||| | Sbjct 27940 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 27881 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| ||||| |||| | |||||| ||| | || Sbjct 27880 AGAGTACGGCCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 27821 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || | || ||| | ||| | |||||| ||| ||| Sbjct 27820 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATGGTGTCTGAGCT---TTC 27765 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 27764 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 27714 >seq8314 Length=67656 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| ||| || || |||||||| || | Sbjct 25997 CACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 25938 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || || ||||| |||||||| |||||||| ||| | | Sbjct 25937 CTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTG 25878 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || ||||| |||| |||||| ||| || Sbjct 25877 GAATGCCTTCCTTGTCTTGAATCTTAGCCTT-AACATTGTCAATGGTGTCTGATGACTCT 25819 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | || || |||||||||||||| Sbjct 25818 ACCTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 25769 >seq8313 Length=21892 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || || ||| || || || |||||||| || | Sbjct 1314 CACCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 1373 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || || || | || || | || ||||| || |||||||| |||||||| ||| | | Sbjct 1374 CTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCGCTGCTGGTCTGGTG 1433 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || ||||| |||| |||||| ||| || Sbjct 1434 GAATGCCTTCCTTGTCCTGAATCTTAGCCTT-AACATTGTCAATGGTGTCCGATGACTCT 1492 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| || || |||||||||||||| Sbjct 1493 ACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328517340708480