Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq20339 224 3e-54 seq22815 149 2e-31 seq12053 140 1e-28 seq7295 138 3e-28 seq6413 113 1e-20 seq24164 104 7e-18 seq94 104 7e-18 seq2793 95.1 4e-15 seq8506 86.0 2e-12 >seq20339 Length=39107 Score = 224 bits (248), Expect = 3e-54 Identities = 588/889 (66%), Gaps = 40/889 (4%) Strand=Plus/Plus Query 19603 TATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGG 19662 |||||| ||| |||| ||||| ||||| ||||||||||| || | ||| | | || | Sbjct 1468 TATTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAG 1527 Query 19663 TAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCC 19720 ||||||||||||||||||| || | || | | || | | || | | Sbjct 1528 GTCTATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCA--CA 1580 Query 19721 ATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAAC 19780 || || |||| || |||||||| ||||||| || ||||||||||| | ||||| Sbjct 1581 ATAGGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAAT 1640 Query 19781 GGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGA 19840 || | || | |||| | | | |||||| | |||| | | | ||||||||| Sbjct 1641 GGTTGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGT 1700 Query 19841 CGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCT 19900 || |||||||| ||||| | | || || | | |||| |||| |||||| | || Sbjct 1701 CGTGAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCA 1760 Query 19901 GCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTC 19960 |||| ||||||| | || | || | || |||| | ||||| || || || Sbjct 1761 ACTCCCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTT 1820 Query 19961 TCCGATGC-TATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGC 20019 | | | ||||||| | || || | |||| ||||| | |||| | ||||| | Sbjct 1821 TTTTAATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGA 1880 Query 20020 CGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGG 20079 ||||| ||||| || ||||||| || ||| || | || || | ||| |||||||| || Sbjct 1881 TGAACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGG 1940 Query 20080 GTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTA 20138 || ||||||||| | ||| | ||| | || || || | | | | | || | | Sbjct 1941 CTCCCTATTCAGTTCTATGAATATTTCAATGGTAACT--CTAGTTCGATCAGGGAACCCA 1998 Query 20139 CTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACA 20198 ||| ||| | || | ||||||| || || ||||| ||||| || ||||| | Sbjct 1999 TAGAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAATA 2058 Query 20199 TCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATA 20258 |||| || |||||||||| ||||| || | |||||||||||| ||| ||||||||| Sbjct 2059 ACGTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAACT 2118 Query 20259 GCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCT 20318 ||| |||| ||| |||| | ||| ||||| || ||| | || | ||| | | | Sbjct 2119 CTTATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCCCTT 2178 Query 20319 TGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCT 20376 | | || || ||| ||||| ||||| || || | |||||| || ||||| || | Sbjct 2179 TAG--GTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAGT 2236 Query 20377 CGACAACAATGGTC-GTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCG 20435 |||| ||| | || || ||| ||| || ||||||| || | Sbjct 2237 TGACA------GTCAGGGTTAT--ATA-----------ATTATC---TGTGCTAACCTTG 2274 Query 20436 GGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484 | | || || ||||||||||| ||||||||||||||||| || ||||| Sbjct 2275 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 2323 >seq22815 Length=10841 Score = 149 bits (164), Expect = 2e-31 Identities = 210/292 (72%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 ||||| ||||| ||| | |||||||| | || || ||||| || |||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 ||||| | || | ||||||||| || || || ||||||||||| ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTC- 8831 Query 20108 CTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTA 20166 |||| || | || | ||| | | || | |||||| | ||| | || | ||||| Sbjct 8832 CTTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 8891 Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 || || || ||||| ||||| || || || ||||||||||| |||| ||| |||| || Sbjct 8892 CAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCG 8951 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTC 20278 || ||||||||||| ||| ||| ||||| ||||| ||||| ||||| Sbjct 8952 ATTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTC-GTACACATCTTC 9002 >seq12053 Length=52445 Score = 140 bits (154), Expect = 1e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 20262 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 20321 |||| ||||||||||||| ||||| ||||| || ||| | || ||||| || || | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 20322 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA 20381 | | || ||||| || || || || ||||||| || ||||| || | | |||| Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACA 51366 Query 20382 ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTG 20441 | |||||||| ||| | ||||||||||| || |||| | |||||| || || | | Sbjct 51365 GTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGG 51306 Query 20442 AGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 | || ||||||||||| ||||||||||||||||| || ||| Sbjct 51305 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq7295 Length=63598 Score = 138 bits (152), Expect = 3e-28 Identities = 194/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 19988 GGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 20047 ||||| || || | | || | |||| || || || || ||||| || |||||||| || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 ||||| | || | ||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTC- 43956 Query 20108 CTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTA 20166 |||| || | || | || | | || | || || | ||| | || | ||||| Sbjct 43957 CTTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTA 44016 Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 | |||| ||||||||||| || || || || ||||||||||||| ||| |||||||| Sbjct 44017 AATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACG 44076 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAA 20256 |||||||| ||||| ||| ||||||||| Sbjct 44077 ATTGATCTTACAATATGCTAGTTTCAACAA 44106 Score = 136 bits (150), Expect = 1e-27 Identities = 193/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 19989 GTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC 20048 |||| ||||| | |||| | ||||| ||||| || || ||||| || |||||||| || | Sbjct 11017 GTACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTC 11076 Query 20049 ACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGC 20108 | || | || | |||||||| ||| | || ||||| ||| | ||||| ||| | Sbjct 11077 ATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTC-C 11135 Query 20109 TTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTAC 20167 ||| || | || | ||| | | || | || ||| | ||| | || | |||||| Sbjct 11136 TTGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTAC 11195 Query 20168 AAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGT 20227 | |||| ||||| ||||| || || || || |||||||||||| ||| |||||||| Sbjct 11196 AGATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGA 11255 Query 20228 TTGATCTTCCAATACGCTTCTTTCAACAA 20256 |||||||||||||| ||| |||||| || Sbjct 11256 TTGATCTTCCAATATGCTAGTTTCAAAAA 11284 >seq6413 Length=53986 Score = 113 bits (124), Expect = 1e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20036 ATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCG 20095 |||||||| || ||||| | || | ||||||||| || || || ||||||||||| Sbjct 29190 ATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCT 29131 Query 20096 ATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCA 20154 ||||| | ||| |||| || | || | ||| | | || | || ||| | ||| | Sbjct 29130 ATGCATGCTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGC 29072 Query 20155 GAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGG 20214 || | ||||||| || || ||||| ||||| || || || |||||||||||||||| Sbjct 29071 TAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATGC 29012 Query 20215 TTACTTTGGACGTTTGATCTTCCA 20238 ||| ||||| || ||||||||||| Sbjct 29011 TTATTTTGGCCGATTGATCTTCCA 28988 >seq24164 Length=10202 Score = 104 bits (114), Expect = 7e-18 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 19938 ACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCA 19997 |||| | ||| | || || || || |||||||||||| | || |||| ||||| |||| Sbjct 3434 ACCCAATCGGTTAAGGAAGTTTTTCTGATGCTATGCCTCTAGGAGTCTCTGGTACTTTCA 3493 Query 19998 ACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 | | |||| | ||||||| || ||||| ||||| || |||||| || || ||| | | Sbjct 3494 ATTTCATGATTATATTCCAGGCTGAACACAACATCCTTATGCACTTATTTCATATGTTAG 3553 Query 20058 GTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGC 20094 ||| || | |||||||| || || ||||||||||| Sbjct 3554 ATGTATCTAGGGTATTCGGCGGCTCCCTATTCAGTGC 3590 >seq94 Length=189492 Score = 104 bits (114), Expect = 7e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20268 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 20327 |||||||||||| ||||| ||||| || ||||| || ||||| | || || || | Sbjct 81681 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 81622 Query 20328 CTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATG 20387 || ||||| || || || || |||||||| || ||||| || | | || | | Sbjct 81621 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 81562 Query 20388 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGA 20447 ||| ||| ||| | |||||||| || || |||| |||||||| || || |||| || | Sbjct 81561 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTA 81502 Query 20448 TGCATGAACG 20457 |||||||||| Sbjct 81501 TGCATGAACG 81492 Score = 100 bits (110), Expect = 8e-17 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20268 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 20327 |||||||||||| ||||| ||||| || ||||| || ||||| | || || || | Sbjct 88210 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 88151 Query 20328 CTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATG 20387 || ||||| || || || || |||||||| || ||||| || | | || | | Sbjct 88150 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 88091 Query 20388 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGA 20447 ||| ||| ||| | |||||||| || || |||| |||||||| || || | || || | Sbjct 88090 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTA 88031 Query 20448 TGCATGAACG 20457 |||||||||| Sbjct 88030 TGCATGAACG 88021 >seq2793 Length=100609 Score = 95.1 bits (104), Expect = 4e-15 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||| ||| ||| | ||||||||||| ||| |||| ||| |||| || || | || || Sbjct 12529 GGTCATGTAATTAACACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTT 12588 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| | ||||||||||||||| || ||||| || Sbjct 12589 ATGCATGAACGTAWTGCTCATAACTTCCCTCTAGACCTAGC 12629 >seq8506 Length=47589 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 || || || |||| ||||||| | || ||||| ||||| ||||| | |||| | |||||| Sbjct 40171 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTC 40112 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||| ||||| || |||||||| || Sbjct 40111 CAAGCTGAACACAACATCCTTATGCACCCATT 40080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148746452466852