Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq20339 221 4e-53 seq12053 141 3e-29 seq22815 125 2e-24 seq7295 118 3e-22 seq94 107 6e-19 seq6413 100 8e-17 seq2793 100 8e-17 >seq20339 Length=39107 Score = 221 bits (244), Expect = 4e-53 Identities = 591/893 (66%), Gaps = 48/893 (5%) Strand=Plus/Plus Query 28731 TATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGG 28790 |||||| ||| |||| || || ||||| ||||||||||| || | ||| || | | | Sbjct 1468 TATTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAG 1527 Query 28791 AAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCC 28848 | |||| |||||||||||||| || | || | | || | | || | | Sbjct 1528 GTCTATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCA--CA 1580 Query 28849 ATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAAC 28908 || || |||| || |||||||| ||||||| || ||||||||||| | ||||| Sbjct 1581 ATAGGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAAT 1640 Query 28909 GGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGA 28968 || | || | |||| | | | |||||| | |||| || | | ||||||||| Sbjct 1641 GGTTGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGT 1700 Query 28969 CGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCA 29028 || |||||||| ||||| | | || || | | || | |||| ||| |||| ||| Sbjct 1701 CGTGAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCA 1760 Query 29029 GCTCCCGTCGCAGCGGC-ATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTT 29087 ||||| | ||||| | ||| || ||||| | || ||||| | |||||||| ||| Sbjct 1761 ACTCCCATTGCAGCTACTATC-GCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTT 1819 Query 29088 TAGCGACGCG-ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAG 29146 | | || |||||| | || | | | || ||||| | |||| | | ||| | Sbjct 1820 TTTTTAATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGG 1879 Query 29147 CCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTG 29206 ||||| ||||| || ||||||| || ||| || | || |||| ||| || ||||| | Sbjct 1880 ATGAACACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCG 1939 Query 29207 GCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACG 29265 |||| ||||| ||| | ||| | ||| | || || || | | | | | || | Sbjct 1940 GCTCCCTATTCAGTTCTATGAATATTTCAATGGTAAC--TCTAGTTCGATCAGGGAACCC 1997 Query 29266 ACTGAA---GACATCT-CTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTA 29321 | ||| || |||| || || | ||||||| || || ||||| ||||| ||||| Sbjct 1998 ATAGAAAGTGA-ATCTGCT---AATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTA 2053 Query 29322 TAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAA 29381 ||| | |||| || |||| ||||| ||||| || | |||||||||||||||| |||||| Sbjct 2054 TAATAACGTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAA 2113 Query 29382 TAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGC 29441 || ||| |||| ||| |||| | ||| ||||| || ||| | || | ||| | Sbjct 2114 CAACTCTTATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTAC 2173 Query 29442 TGCCTTGGGCGTTTCTACA--ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCG 29499 | || | || || ||| ||||| ||||| || || | ||| || || ||||| || Sbjct 2174 CCCTTTAG--GTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCT 2231 Query 29500 CTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAAC 29559 | |||| | ||| | | |||| ||| | |||||| Sbjct 2232 GCAGTTGACAGTCAGGGTTATATAATTA----------------TCT-----GTGCTAAC 2270 Query 29560 CTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCT 29612 || || | ||||| |||||||| |||||||||||||||||||| || || || Sbjct 2271 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 2323 >seq12053 Length=52445 Score = 141 bits (156), Expect = 3e-29 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 29390 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 29449 |||| ||||||||||||| ||||| ||||| || ||| | || ||||| || || | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 29450 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA 29509 | | || ||||| || || || || ||||| | || ||||| || | | |||| Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACA 51366 Query 29510 ACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTG 29569 | |||||||| ||||| |||||||||||| | |||| | |||||||| || | | Sbjct 51365 GTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGG 51306 Query 29570 AAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||| |||||||| |||||||||||||||||||| || || Sbjct 51305 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 51266 >seq22815 Length=10841 Score = 125 bits (138), Expect = 2e-24 Identities = 205/292 (70%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||| ||| | || ||||| | || || ||||| || |||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 ||||| | ||| | ||||| || || ||||| ||||| ||||| ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 29236 CTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 | || || || | | ||| | | || | |||||| | ||| || | ||||| Sbjct 8833 TTGGTAACTTCTT-GTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 8891 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || || || ||||| ||||| ||||| || ||||||||||| || | ||| |||| || Sbjct 8892 CAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCG 8951 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTC 29406 || ||||||||||||||| ||| || || ||||| ||||| ||||| Sbjct 8952 ATTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTC-GTACACATCTTC 9002 >seq7295 Length=63598 Score = 118 bits (130), Expect = 3e-22 Identities = 188/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 29119 ACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCAC 29178 || ||||| | |||| | || || ||||| || || ||||| || |||||||| || || Sbjct 11019 ACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTCAT 11078 Query 29179 ATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTT 29238 || | ||| | |||| || ||| | || ||||| ||| | ||||| ||| | Sbjct 11079 ATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCATAATTCCTTG 11138 Query 29239 GTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAA 29297 || || || | | ||| | | || | || ||| | ||| || | ||||||| Sbjct 11139 GTAACTTC-TAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTACAG 11197 Query 29298 GTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTT 29357 |||| ||||| ||||| ||||| || || |||||||||| | ||| |||||||| || Sbjct 11198 ATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACGATT 11257 Query 29358 GATCTTCCAATATGCTTCTTTCAATAA 29384 |||||||||||||||| |||||| || Sbjct 11258 GATCTTCCAATATGCTAGTTTCAAAAA 11284 Score = 113 bits (124), Expect = 1e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTG 29199 || || || || || ||||| || |||||||| || ||||| | ||| | ||||| || Sbjct 43862 TTTCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTA 43921 Query 29200 TTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGT 29259 ||||| || ||||| ||||| ||||| ||| | || || || || | | Sbjct 43922 AAAGGTGGATCCCTATTCAGTGCTATGCATAATTCCTTGGTAACTTCTAGTTTTATTAGG 43981 Query 29260 GAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACT 29319 || | || || | ||| || | ||||| | |||| ||||||||||| ||| Sbjct 43982 GAAAGCACAAAAAATGAATCTGCTAATGAAGGTTAAATATTTGTTCAAGAAGAAGAAACT 44041 Query 29320 TATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTC 29379 || || || ||||||||||| | ||| |||||||| |||||||| ||||||||| |||| Sbjct 44042 TAGAATATTGTAGCCGCTCATGCTTATTTTGGACGATTGATCTTACAATATGCTAGTTTC 44101 Query 29380 AATAA 29384 || || Sbjct 44102 AACAA 44106 >seq94 Length=189492 Score = 107 bits (118), Expect = 6e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 |||||||||||| ||||| ||||| || ||||| || ||||| | || || || | Sbjct 81681 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 81622 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATG 29515 || ||||| || || || || ||||| || || ||||| || | | || | | Sbjct 81621 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 81562 Query 29516 GTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAA 29575 ||| ||| ||||| |||||||| ||| | |||| || |||||||| || ||||||| | Sbjct 81561 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTA 81502 Query 29576 TGCATGAGCGTA 29587 ||||||| |||| Sbjct 81501 TGCATGAACGTA 81490 Score = 104 bits (114), Expect = 7e-18 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 |||||||||||| ||||| ||||| || ||||| || ||||| | || || || | Sbjct 88210 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 88151 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATG 29515 || ||||| || || || || ||||| || || ||||| || | | || | | Sbjct 88150 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 88091 Query 29516 GTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAA 29575 ||| ||| ||||| |||||||| ||| | |||| || |||||||| || | ||||| | Sbjct 88090 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTA 88031 Query 29576 TGCATGAGCGTA 29587 ||||||| |||| Sbjct 88030 TGCATGAACGTA 88019 >seq6413 Length=53986 Score = 100 bits (110), Expect = 8e-17 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29164 ATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCA 29223 |||||||| || ||||| | ||| | ||||| || || ||||| ||||| ||||| Sbjct 29190 ATGCACCCATTTCACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCT 29131 Query 29224 ATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCA 29282 ||||| | ||| | || || || | | ||| | | || | || ||| | ||| Sbjct 29130 ATGCATGCTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAAGCACAGAAAATGAATCTGC 29072 Query 29283 GAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGG 29342 || | ||||||| || || ||||| ||||| ||||| || |||||||||||||| | Sbjct 29071 TAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCTCATGC 29012 Query 29343 TTACTTTGGACGTTTGATCTTCCA 29366 ||| ||||| || ||||||||||| Sbjct 29011 TTATTTTGGCCGATTGATCTTCCA 28988 >seq2793 Length=100609 Score = 100 bits (110), Expect = 8e-17 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||| ||| ||||| |||||||||||| || |||| || ||||||| || | ||||| Sbjct 12529 GGTCATGTAATTAACACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTT 12588 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||| ||||||||||||||| || || || ||| Sbjct 12589 ATGCATGAACGTAWTGCTCATAACTTCCCTCTAGACCTAGCT 12630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146584449373524