Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq20339 246 9e-61 seq12053 156 1e-33 seq22815 131 5e-26 seq94 122 2e-23 seq7295 114 4e-21 seq24164 96.9 1e-15 seq2793 93.3 1e-14 seq4606 91.5 4e-14 >seq20339 Length=39107 Score = 246 bits (272), Expect = 9e-61 Identities = 605/907 (67%), Gaps = 48/907 (5%) Strand=Plus/Plus Query 18805 GCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATC 18864 || |||||| || | |||||||||| ||||||| ||||| |||||||||||||| || Sbjct 1451 GCAACTATTGTATTTACTATTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATT 1510 Query 18865 CGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTT 18924 | || || || || | | ||||||||||||||||||| || | || | | Sbjct 1511 CATGAAACTTTTTCAAGGTCTATTCTTTATGGAAACAACATGATTT-----GCACTTCTG 1565 Query 18925 CCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 18982 || | | || | | || || |||| || |||||||| ||||||| || ||| Sbjct 1566 CCTACTTCTGCCA--CAATAGGTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTG 1623 Query 18983 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 19042 |||||||| | ||||| || | || | |||| | | | |||||| | |||| | Sbjct 1624 ATGAATGGTTATACAATGGTTGCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAG 1683 Query 19043 TCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGA 19102 | | | ||||||||| || |||||||| ||||| | | || || | || |||| || Sbjct 1684 TATCTTGTTACATGGGTCGTGAGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGA 1743 Query 19103 TTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCAT 19162 || |||||| | ||| |||| |||| || | || | ||| | || | ||| Sbjct 1744 TTGTTGTTGCATGTTCAACTCCCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAA 1803 Query 19163 TTGGTCAAGG----TTCCTTTAGCGACGCTATGCCTTTGGGTATTAG-TGGTACGTTCAA 19217 | |||||||| || |||| | ||||||| | || ||| | | |||| ||||| Sbjct 1804 TAGGTCAAGGAAGTTTTTTTTA---ATCGTATGCCTCTAGG-ATTCGCTAGTACTTTCAA 1859 Query 19218 CTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGG 19277 | |||| || ||||| || |||||| |||||||| ||||||| || ||| || | || Sbjct 1860 TTTCATGATTTTATTCTTGGATGAACACAACATCCTTATGCACCTATTTCACTTGATAGG 1919 Query 19278 TGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTC 19337 || | ||| || |||||||| || ||||| ||| | ||| | ||| | || || Sbjct 1920 AGTTGTTGGGGTATTCGGCGGCTCCCTATTCAGTTCTATGAATATTTCAATGGTAAC--T 1977 Query 19338 CTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGC 19396 || | | | | | ||| | | ||| | |||| || | || |||| || || | Sbjct 1978 CTAGTTCGATCAGGGAACCCATAGAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTC 2037 Query 19397 AAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCC 19456 |||| ||||| |||||||| | || | ||||||| |||||||| || || |||| Sbjct 2038 AAGAGGAAGAAACTTATAATAACGTATCCACTCATGGTTATTTTGGCCGATGGATCTTCC 2097 Query 19457 AGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGG 19516 | || || |||||||| ||| |||||||| | | | |||||||||||| | Sbjct 2098 AATATGCTAGTTTCAACAACTCTTATTCGTTACATTTCATCCTAGTTGCTTGGCCTGTAG 2157 Query 19517 TTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTT 19574 | | || | |||| | ||||| |||| | ||| ||||| || ||| | |||| || Sbjct 2158 TATGTATCTAGTTTAC--CCCTTTAGGTATCAACACTATGGCTTTTAACCTAAATGATTT 2215 Query 19575 TAACTTTAACCAGTCCCTTCTTGACAACAATGGTC-GTGTCATTGATACTTGGGCTGACA 19633 || || ||||| || |||||| ||| | || || ||| | Sbjct 2216 CAATTTCAACCAATCTGCAGTTGACA------GTCAGGGTTAT--ATA-----------A 2256 Query 19634 TTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCC 19693 || || |||||||||| || | || || ||||| |||||||||||||||||||||| Sbjct 2257 TTATC---TGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCC 2313 Query 19694 CACTTGA 19700 | || || Sbjct 2314 CTCTAGA 2320 >seq12053 Length=52445 Score = 156 bits (172), Expect = 1e-33 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 19481 GTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTG 19540 |||| |||| ||||| | |||||||||||||| || | || |||||| ||| | | Sbjct 51485 GTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAG 51426 Query 19541 GGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA 19600 | | ||||| ||||| |||||| | ||||| || | || ||||| || | |||||| Sbjct 51425 GTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACA 51366 Query 19601 ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTG 19660 | |||||||| ||| | ||||||||||| || |||| | ||||||||| || | | Sbjct 51365 GTCAGGGTCGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGG 51306 Query 19661 AGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 | || ||||| ||||||||||||||||||||||| || || Sbjct 51305 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 51266 >seq22815 Length=10841 Score = 131 bits (144), Expect = 5e-26 Identities = 210/297 (71%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||| ||| |||||||||||| ||| || |||||||| |||||||| || Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 ||||| | || | |||||||| ||||| || ||||| ||||| ||||| | ||| Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTC- 8831 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | ||| | | |||| |||||| | | |||| || | || || Sbjct 8832 CTTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTA 8891 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || || || ||||| ||||| ||||| || || || || || |||| ||| |||| || Sbjct 8892 CAGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCG 8951 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTC-TCTACAT-TTCTTTTTG 19500 | || ||||| || || || ||||| ||||| | |||| |||| |||| Sbjct 8952 ATTAATCTTCCAATATGCTAGTTTYAACAACTCTCGTTCGTACACATCTTCTCTTTG 9008 >seq94 Length=189492 Score = 122 bits (134), Expect = 2e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||| ||||| |||||||||||||| || || || |||||| |||| | || | | Sbjct 81681 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 81622 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606 |||| ||||| |||||| | ||||| || || || ||||| || | |||| | | Sbjct 81621 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 81562 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 ||| ||| ||| | |||||||| || || |||| ||||||||||| || |||| || | Sbjct 81561 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTA 81502 Query 19667 TGCACGAACGTA 19678 |||| ||||||| Sbjct 81501 TGCATGAACGTA 81490 Score = 116 bits (128), Expect = 1e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||| ||||| |||||||||||||| || || || |||||| |||| | || | | Sbjct 88210 TACACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCA 88151 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606 |||| ||||| |||||| | ||||| || || || ||||| || | |||| | | Sbjct 88150 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGT 88091 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 ||| ||| ||| | |||||||| || || |||| ||||||||||| || | || || | Sbjct 88090 GTCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTA 88031 Query 19667 TGCACGAACGTA 19678 |||| ||||||| Sbjct 88030 TGCATGAACGTA 88019 >seq7295 Length=63598 Score = 114 bits (126), Expect = 4e-21 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| || || | | || || |||| |||||||| || |||||||| |||||||| || Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 ||||| | || | |||||||| || || || ||||| ||||| ||||| ||| Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCATAATTC- 43956 Query 19327 CTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 |||| || | || | || | | |||| || || | | |||| || | || || Sbjct 43957 CTTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTTA 44016 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 | |||| ||||||||||| ||||| || ||||| || ||||||| |||||||| || Sbjct 44017 AATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGACG 44076 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAA 19475 | || || || || || |||||||| Sbjct 44077 ATTGATCTTACAATATGCTAGTTTCAACAA 44106 >seq24164 Length=10202 Score = 96.9 bits (106), Expect = 1e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 19183 GACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAA 19242 || ||||||||| | || | |||||| ||||| | |||| || |||||||||||||| Sbjct 3460 GATGCTATGCCTCTAGGAGTCTCTGGTACTTTCAATTTCATGATTATATTCCAGGCTGAA 3519 Query 19243 CATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCA 19302 || |||||||| |||||| || || ||| | | ||| || | || |||||||| || Sbjct 3520 CACAACATCCTTATGCACTTATTTCATATGTTAGATGTATCTAGGGTATTCGGCGGCTCC 3579 Query 19303 CTATTTAGTGC 19313 ||||| ||||| Sbjct 3580 CTATTCAGTGC 3590 >seq2793 Length=100609 Score = 93.3 bits (102), Expect = 1e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||| ||| ||| | ||||||||||| ||| |||| ||| ||||||| || | || || Sbjct 12529 GGTCATGTAATTAACACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTT 12588 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||| ||||||||||||||| || || Sbjct 12589 ATGCATGAACGTAWTGCTCATAACTTCCCTCTAGA 12623 >seq4606 Length=79409 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||||||||| |||||| | ||||| ||||||||||||| || || || |||||| Sbjct 33385 TTTATTATTGCCTTTATTGCTACTCCTCCAGTAGACATTGATGATATTCGTGAACCTGTT 33326 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACA 18904 |||| |||| ||||| |||||||||| Sbjct 33325 TCAGGGTGTCTACTTTACGGAAACAACA 33298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141070701839652