Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4177 149 9e-31 seq18349 122 1e-22 seq15927 104 3e-17 >seq4177 Length=96264 Score = 149 bits (164), Expect = 9e-31 Identities = 578/903 (64%), Gaps = 8/903 (1%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||||||| ||| || || || ||||| | ||||| || |||||||| || ||| Sbjct 67267 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 67208 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | || || ||||| ||||||| ||||| ||||| || | || | | | Sbjct 67207 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 67148 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || || | | |||||| || || ||||| ||||||||| | |||||| || | | Sbjct 67147 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 67088 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 |||||||| | || | || ||||| || | ||||| |||| || || || Sbjct 67087 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACA 67028 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTA 39607 || |||| | || | ||| ||| ||| | | | | | || ||| | | Sbjct 67027 GCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAACAAACTGTAA 66968 Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 | || | || || || ||||| || | || || ||||| |||||| || || || Sbjct 66967 AGCA---AACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAG 66911 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | ||||||||||| || || ||||| | ||||||||| | | || ||| | | Sbjct 66910 AAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCC 66852 Query 39728 GAA-AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC 39786 | ||||| || ||||| || ||||| || || | | ||| || || || | Sbjct 66851 GCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCAGA 66792 Query 39787 ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 || ||||| | ||||| | || ||||| | |||||||| ||||| || || Sbjct 66791 CCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAAT 66732 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 ||| || | | ||||| ||| ||| || | || | || | | || ||| Sbjct 66731 TGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACT 66672 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||| || |||||||| || ||||| || || || || || || ||| | || || Sbjct 66671 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTC 66612 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | || || || ||| || ||| | || | || || ||||| || || Sbjct 66611 GGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGA 66552 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 ||||||||||| || | ||||| | || |||| ||||| ||| ||| | || | Sbjct 66551 GGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTC 66492 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||||| | |||| | || | ||| |||||||| | ||||| || || ||| || Sbjct 66491 CCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGC 66432 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 || |||||||| | ||| || | |||| || ||||| || ||| |||| || ||| Sbjct 66431 TTTCTTGTACATCTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGG 66372 Query 40207 ATT 40209 || Sbjct 66371 GTT 66369 >seq18349 Length=14259 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||||||| ||| Sbjct 4643 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 4702 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | | |||||||| | |||| Sbjct 4703 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 4762 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 4763 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 4822 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | || || |||||| Sbjct 4823 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 4864 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||| || |||||||||||| | | ||| | || || Sbjct 4964 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 5023 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || ||| || |||| | ||| | ||||| Sbjct 5024 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 5083 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| ||| || || || || ||||| ||| ||||| Sbjct 5084 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 5143 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 5144 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 5191 >seq15927 Length=13211 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| ||| Sbjct 3712 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 3771 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||||||||| || | || || || || | ||| Sbjct 3772 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAC 3831 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| | | || |||||||| Sbjct 3832 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCGTAAGAGTATCATATATG 3891 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | || || |||||| Sbjct 3892 CCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 3933 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || || Sbjct 4131 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 4190 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| || | ||||| |||||| | || ||||| | | || | ||||| Sbjct 4191 ATATGTCATGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 4250 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | ||| || | || | || || || ||||| || |||| || Sbjct 4251 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 4310 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| ||||| || || Sbjct 4311 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 4358 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||||| ||| || ||| || || || || ||||| ||| ||||||| Sbjct 3202 CTCTTTTTCATATTTTGTGTACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 3261 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||||||||||| | ||| ||||| | ||| | ||| |||| || |||| Sbjct 3262 AGGAGCCTCATTTGGACAAAACAAAGACCATATCCCAT--TGCTTTGGACTCTTTGCATA 3319 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||||| | | ||| ||||| Sbjct 3320 AAAAGATCTGGCACCCAAAGAGC-ATAGAAAAGATCTCGTGCCCGATTCTCTTC 3372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686508727142160