Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6438 100 4e-16 seq5004 87.8 2e-12 >seq6438 Length=95911 Score = 100 bits (110), Expect = 4e-16 Identities = 223/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 11905 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTA 11964 |||| |||||| | | ||||||||| ||| | || || | || |||||| ||| | Sbjct 27644 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 27703 Query 11965 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 12023 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 27704 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 27763 Query 12024 -----GATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACC 12078 | || | | | |||||| ||| | |||| || | || ||||| || Sbjct 27764 GGGCTGTAGGGAGGATAAAAATCG-GGCTG--CAGAGCAAGGTTTTT---TTGGGTAATT 27817 Query 12079 TCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTAC 12138 | | || ||||||||||| ||| |||||||| ||||| |||||| | | | Sbjct 27818 TACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGC 27877 Query 12139 TTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGG 12198 | || ||||| | | ||||| || || || || |||| ||| |||| | || || Sbjct 27878 TGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAGG 27937 Query 12199 AGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 12230 |||| | || | |||||| | |||||| Sbjct 27938 AGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 27969 >seq5004 Length=42262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| |||||||| || ||||| || || || || | |||||||| || Sbjct 9410 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 9469 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| |||| | |||| | || || || ||||| ||||| || || || ||||| Sbjct 9470 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 9529 Query 14273 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || | ||| || || ||||| | ||| | ||||| || || |||||||| Sbjct 9530 GGC-GCTTTCGACTTTGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 9588 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||||| ||| ||||| | | || | ||| || || || || || ||||| || Sbjct 9589 AAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 9648 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||| || | ||||||||||| || |||||| Sbjct 9649 TACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGT 9685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618075007878640