Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25728 125 8e-24 seq5004 114 2e-20 >seq25728 Length=33906 Score = 125 bits (138), Expect = 8e-24 Identities = 304/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 13698 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 13757 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 13758 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 13815 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 13816 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 13873 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 13874 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 13932 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 13933 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 13992 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 13993 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 14051 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 ||||| || ||| | || || ||||| ||||| | | ||| || | ||| Sbjct 14052 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 14109 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||||||| ||| | ||| || || Sbjct 14110 AATCTCTCAGGTTTCTTCAAAAATTCTAC 14138 >seq5004 Length=42262 Score = 114 bits (126), Expect = 2e-20 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 9410 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 9469 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| |||| | |||| ||||||| ||||||||||||||||| || || || || Sbjct 9470 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 9529 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||||| | || ||||| | ||||| || || || | || |||||||| Sbjct 9530 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 9585 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 9586 CACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 9645 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || | ||| ||||| || |||||||| Sbjct 9646 AGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 9684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582921094328560