Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11273 158 8e-34 seq2718 102 5e-17 seq30 98.7 6e-16 seq5748 84.2 1e-11 seq13059 82.4 5e-11 >seq11273 Length=79338 Score = 158 bits (174), Expect = 8e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 32418 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32359 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | |||| |||||||||||||| ||||| || |||||||||||||| || || Sbjct 32358 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32299 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 32298 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 32240 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || |||||||| |||||| Sbjct 32239 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 32191 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||| ||||||||| |||||| || ||||| || |||| | Sbjct 32646 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 32587 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | | || |||||||||||||| ||||| || |||||||||||||| || || Sbjct 32586 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 32527 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| |||| ||| || | ||| || ||| ||||| || Sbjct 32526 ATACCCTCCTTGTCT-TGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 32468 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| |||||||| Sbjct 32467 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 104 bits (114), Expect = 1e-17 Identities = 169/239 (71%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||||||||||||||||||| |||||| | |||||||| ||| | Sbjct 21961 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTAGATGTTATAGTCTATA 22020 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGC-TGTTGGTCCGGCGG 34598 || | | | | || |||||||||||||| ||||| || ||| || | |||| || || Sbjct 22021 AGGTTCCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAAATGCTTCTTGGGGGGGGGG 22080 Query 34599 --------CACTC-CCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATT-GTGTCTT 34648 | | ||||||||||| ||| ||||| ||| ||| | ||| || ||| Sbjct 22081 GGGGGGGATAGGCTCCTCCTTGTCT-TGAATTTTTGCTTTGACGTTGTCATTGGTATCTG 22139 Query 34649 CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || |||| || || || || || || | || || |||||||| |||||| Sbjct 22140 AACTCTCAACCTCCAACGTAATTGTCTTCCCAGTCTAAGTCTTGACAAAAATTTGCATG 22198 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||||||| || | || | || || || || || |||||||| ||||||| Sbjct 32191 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 32132 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | || |||||||| || || ||||| || || | ||| ||||| || || Sbjct 32131 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 32072 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| |||| |||||| | || || ||| ||||| | Sbjct 32071 AATACCCTCCTTGTCTTGGATC-TTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAA 32013 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || || || || || || || || || ||||| || |||||| Sbjct 32012 CCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 31963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||| | || | || || || || || |||||||| ||||||| Sbjct 22198 GCCACCTCTAAGACGTAGAACAACGTGCAGGGTTGACTGTTTCTGAATGTTGTAATCTGC 22257 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | ||||||||||| | || |||||||| || | ||| |||| || || Sbjct 22258 CAAGGTCCTTCCATCTTCAAGTTGCTCTCCAGCAAATATCAATCTCTGCTGGTTTGGAGG 22317 Query 34599 CACTCCCTCC-TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | |||||| |||||| |||| |||| |||||| | || || ||| ||||| Sbjct 22318 AATACCCTCCTTTGTCTTGGATC-TTTGCTTTAACATTGTTGATAGTATCTGAACTCTCA 22376 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA 34705 || |||| || || || || || || || || || ||||| || |||| Sbjct 22377 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCA 22425 >seq2718 Length=65933 Score = 102 bits (112), Expect = 5e-17 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTGTTCGCTCGTCT 34554 |||||| || || || ||||||||| |||||||| || | |||||| || | || Sbjct 45183 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTG--CGGCCATCC 45126 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || || || || || ||||| || || | ||| ||||| || || | |||||||||||| Sbjct 45125 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCT 45066 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 |||| || | || || | ||| ||||| |||||| || |||| ||| || || Sbjct 45065 TGGATC-TTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGT 45007 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| | || || ||||| |||||||| Sbjct 45006 TTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| |||||| || ||||| || || | || || || Sbjct 44507 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGG 44448 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || || | ||| ||||| || || | || ||| Sbjct 44447 CCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCC 44388 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | || ||| | ||| |||||| ||| || || || | ||| Sbjct 44387 TTATCCTGGATC-TTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGT 44329 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || ||||| || |||||||| Sbjct 44328 AATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 44290 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | ||| || || | || || || || ||||| || || Sbjct 44937 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 44878 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||| ||||| || || | |||||||||||| |||| || | ||||| Sbjct 44877 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATC-TTAGCCTTAACAT 44819 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| ||||| ||| ||||| |||| || || || || ||||| | || || | Sbjct 44818 TATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATAGTCTTTCCGGTGAGGGTCTTAA 44759 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 44758 CAAAAATCTGCAT 44746 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| || |||||| || ||||| ||||| | || || || Sbjct 44279 AGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGT 44220 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | | || || ||||| || | || ||| Sbjct 44219 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAGCCTTTGCTGATCCGGGGGAATCCCTTCC 44160 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | ||||| || || ||||| || | ||| Sbjct 44159 TTGTCCTGGATC-TTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGT 44101 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||||||||||| |||||||| Sbjct 44100 GATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 44062 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || || || || | ||| || || | || ||||| || ||||| || || Sbjct 45392 TCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAG 45333 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| ||||| || || | ||||||||||| ||| || | ||| || | Sbjct 45332 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTC-CTGAATCTTAGCTTTCACATT 45274 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| |||||||| |||| || || || || ||||| || || ||||| Sbjct 45273 GTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCAC 45214 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 45213 AAAGATCTGCAT 45202 >seq30 Length=32432 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| || || | || || | | ||||||||||| || || ||||| Sbjct 633 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAA 574 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | | ||| ||||| || || | |||||||||||| ||| || | || || Sbjct 573 GATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCACAT 515 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| || || |||||||| |||| ||||| ||||| || || || || |||| Sbjct 514 TGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCA 455 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 454 CAAAAATCTGCAT 442 >seq5748 Length=24579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||| ||| || | ||| | || |||||||||||| || ||||| | | Sbjct 10194 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 10253 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | || || | || |||||| || |||||| ||| | ||||| || | || Sbjct 10254 AGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGA 10313 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| |||| |||||| | ||| |||| |||| ||| Sbjct 10314 ATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCAC 10372 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || | | ||||| ||||| || ||||| Sbjct 10373 ATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 10420 >seq13059 Length=23383 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||| || |||||||||| || || || | ||||||||||| ||||| |||||||| Sbjct 4648 TTTTGGATATTATAATCTGCTAGCGTACGTCCATCTTCAAGTTGCTTACCAGCAAATATC 4707 Query 34579 AAACGCTGTTGGTCCGGCGG 34598 |||||||| |||||||| || Sbjct 4708 AAACGCTGCTGGTCCGGAGG 4727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314550876272402