Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq20339 253 2e-62 seq12053 152 6e-32 seq7295 131 2e-25 seq94 131 2e-25 seq22815 118 1e-21 seq8506 104 3e-17 seq2793 96.9 4e-15 >seq20339 Length=39107 Score = 253 bits (280), Expect = 2e-62 Identities = 596/896 (67%), Gaps = 44/896 (5%) Strand=Plus/Plus Query 176213 TTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGAT 176272 |||| || |||| || || || || || || || ||||||| ||| | | || | | Sbjct 1470 TTGCCTTCCTTGCTGCTCCTCCAGTAGACATTGATGGTATTCATGAAACTTTTTCAAGGT 1529 Query 176273 CTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCG 176332 || | || |||||||||||||| || | ||| | | || | || | |||| | Sbjct 1530 CTATTCTTTATGGAAACAACATGATTT-----GCACTTCTGCCTACTTCTGCCACAATAG 1584 Query 176333 GACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAG 176392 | |||| || |||||||||||||||| ||| | ||||| |||||| | |||||||| Sbjct 1585 GTTTACATTTTTACCCAATCTGGGAAGAGGCATCCGTTGATGAATGGTTATACAATGGTT 1644 Query 176393 GACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCC 176452 | || || |||| || | | |||||| | | || | || ||||||||| || Sbjct 1645 GCCCTTATGAACTAATTTTTCTACACTTCTTACTTGGAGTATCTTGTTACATGGGTCGTG 1704 Query 176453 AATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 176512 | ||||| ||||||| | || || | || |||| ||| |||||||| || | | Sbjct 1705 AGTGGGATCTTAGTTTCCCTCTGGGTACGCCACCTTAGATTGTTGTTGCATGTTCAACTC 1764 Query 176513 CAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGG-ATCTTTCTCT 176571 | | | || | || ||| ||||| | || | ||| | |||||||| | ||| | | Sbjct 1765 CCATTGCAGCTACTATCGCATTTTTCTTAATCAACCCAATAGGTCAAGGAAGTTTTTTTT 1824 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 || |||||||||| || | | |||| ||||| || ||| || ||||| | || Sbjct 1825 AATCGTATGCCTCTAGGATTCGCTAGTACTTTCAATTTCATGATTTTATTCTTGGATGAA 1884 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCT 176691 |||||||| || ||||||| ||| || || | ||||| | || || || || || || Sbjct 1885 CACAACATCCTTATGCACCTATTTCACTTGATAGGAGTTGTTGGGGTATTCGGCGGCTCC 1944 Query 176692 CTTTTCTCAGCAATGCACGGAAGTC--TTGTTACTTCTTCACTTGTTAGA-GAGACAACC 176748 || ||| | ||| | | || | || ||| || ||| || || |||| Sbjct 1945 CTATTCAGTTCTATGAA--TATTTCAATGGTAACT------CTAGTTCGATCAGGGAACC 1996 Query 176749 ----GAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 |||| ||||| || | ||||||| ||| || ||||| ||||| || || || Sbjct 1997 CATAGAAAGTGAATCTGCTAATGAAGGTTACAGATTGGGTCAAGAGGAAGAAACTTATAA 2056 Query 176805 CATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 | ||| | | || ||||| ||||| || |||||||| |||||| |||||| || Sbjct 2057 TAACGTATCCACTCATGGTTATTTTGGCCGATGGATCTTCCAATATGCTAGTTTCAACAA 2116 Query 176865 CTC-AAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTG 176923 ||| | || | || ||| |||| | || | || || || || |||| |||||| Sbjct 2117 CTCTTATTCGT-TACATTTCATCCTAGTTGCTTGGCCTGTAGTATGTATCTAGTTTACCC 2175 Query 176924 CAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCT 176983 | | ||| | ||| ||||| || ||||| || | |||||| |||||||| |||| Sbjct 2176 CTTTAGGTATCAACACTATGGCTTTTAACCTAAATGATTTCAATTTCAACCAATCTGCAG 2235 Query 176984 TAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTG 177043 | |||| || | ||| |||| ||| | |||| ||||||| Sbjct 2236 TTGACA------GTCA---------------GGGTTATATAATTATCTGTGCTAACCTTG 2274 Query 177044 GTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||||| || ||||||||||| |||||||| || ||||| ||||| Sbjct 2275 GTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTATCTGCT 2330 >seq12053 Length=52445 Score = 152 bits (168), Expect = 6e-32 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 ||||||||||| || || | || || || | |||||||||| || | ||| | || Sbjct 51477 CACTTCTTCCTAGCTGCTTGGCCTGTAGTACGTATCTGGTTTATCGCTTTAGGTATCAGC 51418 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGT 176997 || ||||| |||||||| || ||||||| |||||||| ||||| | |||| ||| Sbjct 51417 ACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCAATCTGTAGTTGACAGTCAGGGT 51358 Query 176998 AAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATG 177057 || ||| || |||| |||||| | |||| ||| ||||||||||||||||||||| Sbjct 51357 CGTGTAATTAACACTTGGGCTGATATCATCAACCRTGCTAACCTTGGTATGGAAGTTATG 51298 Query 177058 CACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 || || ||||||||||| |||||||| || ||| Sbjct 51297 CATGAACGTAATGCTCATAACTTCCCTCTAGAC 51265 >seq7295 Length=63598 Score = 131 bits (144), Expect = 2e-25 Identities = 194/273 (71%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 176597 GTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCC 176656 |||| ||||| || ||| ||||||| ||||| ||||||||||| || ||||||||||| | Sbjct 11017 GTACTTTCAATTTCATGATTGTATTTCAAGCTGAGCACAACATCCTTATGCACCCATTTC 11076 Query 176657 ATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTC 176716 |||| | || || | ||||| ||| |||| || || | ||||| || || Sbjct 11077 ATATCATAGGCCTAACTGGTGTAAAAGGTTGATCCCTATTAAGTTCTATGCA--TAATTC 11134 Query 176717 --TTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTA 176774 | || |||||| | |||| || | || ||||| ||||| || | ||||| Sbjct 11135 CTTGGTAACTTCTAGTTTGATTAGGGAAAGCACAGAAAATGAATCTGCTAATGAAGGTTA 11194 Query 176775 CAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCG 176834 || ||| | ||||| ||||| || || || ||| |||| || || | ||| ||||| || Sbjct 11195 CAGATTTGTTCAAGAGGAAGAAACTTAGAATATTATAGCCGCTCATGCTTATTTTGGACG 11254 Query 176835 TCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 | |||||||| |||||| |||||| ||||| Sbjct 11255 ATTGATCTTCCAATATGCTAGTTTCAAAAACTC 11287 Score = 129 bits (142), Expect = 7e-25 Identities = 194/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655 ||||| || || || || || |||| || || ||||||||||| || ||||||||||| Sbjct 43838 GGTACTTTGAATTTCCTGATTTTATTTCAGGCTGAGCACAACATCCTTATGCACCCATTT 43897 Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715 || || | || |||| ||||| |||||||| || ||| || ||||| || | Sbjct 43898 CACATCTTAGGCCTAGCTGGTGTAAAAGGTGGATCCCTATTCAGTGCTATGCAT--AATT 43955 Query 176716 CTT--GTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTT 176773 | | || |||||| || |||| || | || |||| ||||| || | |||| Sbjct 43956 CCTTGGTAACTTCTAGTTTTATTAGGGAAAGCACAAAAAATGAATCTGCTAATGAAGGTT 44015 Query 176774 ACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTC 176833 | | ||| | ||||||||||| || || || |||||||| || || | ||| ||||| | Sbjct 44016 AAATATTTGTTCAAGAAGAAGAAACTTAGAATATTGTAGCCGCTCATGCTTATTTTGGAC 44075 Query 176834 GTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 | | ||||| || |||||| |||||| ||||| Sbjct 44076 GATTGATCTTACAATATGCTAGTTTCAACAACTC 44109 >seq94 Length=189492 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 |||||||||| || || | || || || | ||||||||||| || | ||| | || Sbjct 88208 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 88149 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-G 176996 || ||||| |||||||| || |||||||| |||||||| ||||| | || | || | | Sbjct 88148 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA-TAGTCAGTG 88090 Query 176997 TAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTAT 177056 | | || ||| || |||| |||||| | |||||||| |||||||||||||||||||| Sbjct 88089 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTAT 88030 Query 177057 GCACGAGCGTA 177067 ||| || |||| Sbjct 88029 GCATGAACGTA 88019 Score = 125 bits (138), Expect = 9e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 176878 CACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGC 176937 |||||||||| || || | || || || | ||||||||||| || | ||| | || Sbjct 81679 CACTTCTTCCGAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 81620 Query 176938 ACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-G 176996 || ||||| |||||||| || |||||||| |||||||| ||||| | || | || | | Sbjct 81619 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA-TAGTCAGTG 81561 Query 176997 TAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTAT 177056 | | || ||| || |||| |||||| | |||||||| ||||||||||| |||||||| Sbjct 81560 TCATGTAATTAACACTTGGGCCGATATCATCAACCGTGCTAACCTTGGTATTGAAGTTAT 81501 Query 177057 GCACGAGCGTA 177067 ||| || |||| Sbjct 81500 GCATGAACGTA 81490 >seq22815 Length=10841 Score = 118 bits (130), Expect = 1e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655 ||||| ||||| | || |||||||||| | || |||||||| || ||||||||||| Sbjct 8713 GGTACTTTCAATGTCATTATTGTATTCCAGGATGACCACAACATCCTTATGCACCCATTT 8772 Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715 || || | || |||| ||||| || || || || ||| || ||||| | Sbjct 8773 CACATCTTAGGCCTAGCTGGTGTAAAAGGCGGCTCCCTATTCAGTGCTATGCATGCTTCC 8832 Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775 | || ||||||| | | || || | || ||||| ||||| || | |||||| Sbjct 8833 TTGGTAACTTCTTGTTTGATCAGGGAAAGCACTGAAAATGAATCTGCTAATGAAGGTTAC 8892 Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835 | |||||| ||||| ||||| || || || || ||||| || || | ||| |||| || Sbjct 8893 AGATTCGGTCAAGAGGAAGAAACTTAGAATATCGTAGCCGCGCATGCTTATATTGGCCGA 8952 Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 | |||||||| |||||| ||| || ||||| Sbjct 8953 TTAATCTTCCAATATGCTAGTTTYAACAACTC 8984 >seq8506 Length=47589 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 ||| ||||||||||||||||| || || || ||||| ||||| || ||| |||||||||| Sbjct 40169 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCA 40110 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATT 176654 ||| || |||||||| || ||||||||||| Sbjct 40109 AGCTGAACACAACATCCTTATGCACCCATT 40080 >seq2793 Length=100609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 || |||| ||||| | |||||| | ||||||||||||||||||||||| || |||| | Sbjct 12544 ACTTGGGCTGATATTATCAACCGTTCTAACCTTGGTATGGAAGTTATGCATGAACGTAWT 12603 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||| |||||||| || ||||| |||||| Sbjct 12604 GCTCATAACTTCCCTCTAGACCTAGCTGCT 12633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603142909774080