Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq11273 87.8 1e-12 seq2718 87.8 1e-12 >seq11273 Length=79338 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | |||||||| |||||| | || || || || | Sbjct 32192 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 32251 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||| || ||||| || ||| |||| || | Sbjct 32252 GATACCATTGACAAT--GTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 32309 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || || || || ||||| || |||||| | || |||| | | |||| | || ||| Sbjct 32310 AACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTG-CAGACTAC 32368 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| |||| ||||||||| | || || Sbjct 32369 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || || || ||| || |||| ||||| ||| | Sbjct 22882 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 22823 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| | ||||| |||||| |||| || Sbjct 22822 AGACACCATTGATAAT--GTCAAAGCTAAAATTGAAGACAAGGAAGGTATTCCCCCAGAC 22765 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTCCGATT 27964 ||||| || | || ||||| || || || | || || | || ||| ||| | |||| Sbjct 22764 CAGCAGAGGCTGATCTTTGCTGGGAATCATCTTGAAGATGGCCGAACAG-TTG-CTGATT 22707 Query 27965 ACAACATCCAAAAAGAG 27981 ||||||||||||| ||| Sbjct 22706 ACAACATCCAAAAGGAG 22690 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||| || || || ||| || |||| ||||| ||| | Sbjct 31508 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 31567 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 31568 GACACCATTGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 31625 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || ||||| || ||||| | || || | || | |||| | |||||| Sbjct 31626 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTAC 31684 Query 27967 AACATCCAAAAAGAG 27981 ||||||||||| ||| Sbjct 31685 AACATCCAAAAGGAG 31699 >seq2718 Length=65933 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| |||||||| || || ||||| |||| ||||||||| | Sbjct 44290 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAGACGATTACCCTTGAGGTCGAAAGCTCA 44349 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || || || ||||| |||| || | Sbjct 44350 GACACCATTGACAAC--GTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCAGACC 44407 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || ||||| || | |||| | | | || |||| Sbjct 44408 AGCAGAGGTTGATCTTTGCAGGAAAGCAGTTGGAAGATGGCCGCACCCTAGCTGACTACA 44467 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 44468 ACATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGG 44516 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || ||| || | || || ||||| | Sbjct 44062 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 44121 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || || || || ||||| ||||| |||| || Sbjct 44122 GA-----TACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCGG 44176 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| || | || || |||||||| || ||||| |||| ||| | | | |||| Sbjct 44177 ATCAGCAAAGGCTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATT 44236 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| || | |||||||| | ||| | ||||| || Sbjct 44237 ACAACATCCAGAAGGAGTCTACCCTCCATTTGGTGCTCCGTCTACGTGGTGG 44288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355660318420638