Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11273 104 2e-17 seq29 93.3 4e-14 seq21138 91.5 1e-13 seq10342 82.4 7e-11 >seq11273 Length=79338 Score = 104 bits (114), Expect = 2e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| ||||||||||| | || ||||||||| Sbjct 31710 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 31651 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 31650 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 31591 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| ||| || || | || ||| | ||||| Sbjct 31590 GCTTTGACATTATCAATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCCG 31534 Query 39259 GTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| ||||||||||||||||||||| Sbjct 31533 GTCAGAGTTTTAACAAAGATTTGCATC 31507 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| |||| |||||| | || ||||| || Sbjct 22679 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAACTGTTCGGCCATCTTCAAGATGA 22738 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 22739 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTCAATTTTA 22798 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || |||| || || || | || ||| | ||||| Sbjct 22799 GCTTTGACATTATCAATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTTCCG 22855 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||||||||||||||||||| Sbjct 22856 GTCAGAGTTTTAACAAAGATTTGCAT 22881 >seq29 Length=28306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || || || ||||| || || || || |||| || Sbjct 27923 CACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAGAGTACGGCCGTCTTC 27864 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | ||| | || || |||||| Sbjct 27863 AAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 27804 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCG-TATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || ||| | ||| | || | | || ||| ||||| || | |||||| Sbjct 27803 GATCTTGGCTTTAA-CGTTGTCAATGGTGTCTGAGCTT---TCCACCTCAAGGGTGATAG 27748 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | ||||| || || ||||||||||| || ||||||| ||| Sbjct 27747 TCTTTCCAGTGAGGGTTTTAACAAATATCTGCATCTGTAC 27708 >seq21138 Length=28562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || || || || |||||||| || || | || || Sbjct 13011 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 13070 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || | |||||||||||| | ||| | | || |||||| Sbjct 13071 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 13130 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | || ||| ||||| || || | ||||| | || Sbjct 13131 GATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 13190 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 13191 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 13223 >seq10342 Length=47294 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 31910 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 31851 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 31850 TCAGTCGCTGCTGGTCCGGTGG 31829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429301676356322