Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1518 140 2e-28 seq11273 109 4e-19 seq29 107 1e-18 seq8314 95.1 8e-15 seq5748 91.5 1e-13 seq8313 89.7 3e-13 seq2718 89.7 3e-13 >seq1518 Length=20725 Score = 140 bits (154), Expect = 2e-28 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || |||||||| || |||||||| || Sbjct 13652 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 13711 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| |||| ||| | ||| | || ||| ||||| |||||| | || ||||| Sbjct 13712 AGCGACACTATTGACAATGTCAAAGC-TAAGATTCAAGACAAGGAAGGTATTCCACCAGA 13770 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || ||||| | ||| ||| ||| ||||| Sbjct 13771 CCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGACGTACTCTAGCTGATTA 13830 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 13831 CAACATTCAGAAAG 13844 >seq11273 Length=79338 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| || || ||||| || || ||||| || || || | | Sbjct 22882 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 22823 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | |||| ||| ||||| |||||| | || ||||| | Sbjct 22822 AGACACCATTGATAATGTCAAAGCTAAAA-TTGAAGACAAGGAAGGTATTCCCCCAGACC 22764 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || || || ||||| | || || | | ||||||| Sbjct 22763 AGCAGAGGCTGATCTTTGCTGGGAATCATCTTGAAGATGGCCGAACAGTTGCTGATTACA 22704 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| |||||||| Sbjct 22703 ACATCCAAAAGGAGTCCAC 22685 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | |||||||| || ||||| || ||||| ||||| || |||||||| || || | Sbjct 31272 TATTTCAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCG 31331 Query 23663 ACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 | | ||||| |||| ||| | ||| | || | || ||||| ||||| | || Sbjct 31332 AGAGTTCTGACACCATTGATAATGTCAAAGCTAAGA-TTCAAGACAAGGAAGGCATTCCT 31390 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 |||||||| ||| | | || ||||| || ||||| || ||||| | || || | | Sbjct 31391 CCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCT 31450 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||||||||| || Sbjct 31451 GATTACAACATCCAAAAAGAGTCTAC 31476 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||| || || ||||| || || ||||| || || || | | Sbjct 31508 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 31567 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| || ||||| |||||| | || ||||| || Sbjct 31568 GACACCATTGATAATGTCAAAGCTAAAA-TTCAAGACAAGGAAGGTATTCCCCCAGACCA 31626 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | || || | | |||||||| Sbjct 31627 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAA 31686 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 31687 CATCCAAAAGGAGTCCAC 31704 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || || || | || ||||| | Sbjct 32192 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 32251 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 32252 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 32310 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || |||| | ||| | | || ||||| Sbjct 32311 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAA 32370 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 32371 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| | || ||||| | Sbjct 32420 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 32479 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||| || ||| | || ||||| || Sbjct 32480 GATACCATTGACAATGTGAAAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCA 32538 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || |||||||| || || | | ||| | | || ||||| Sbjct 32539 ACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAA 32598 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | ||| | || || | ||| ||||||| Sbjct 32599 CATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 32646 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 31736 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 31795 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || |||||| || || ||||| | || ||||| || Sbjct 31796 GATACTATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 31855 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| ||||| || || | | | || | | || ||||| Sbjct 31856 CAGAGACTGATCTTTGCCGGCAAGCAACTCGAGGATGGAAGGACCCTGGCTGACTACAAT 31915 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || |||||||| || |||||| | ||| Sbjct 31916 ATTCAGAAAGAGTCTACCTTACATCTTGTT 31945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAA-ACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| || ||| || || ||||| ||||| || |||||||| || || || | Sbjct 23109 ATGCAGATATTTGTTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTC 23050 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| ||| | ||||| || ||| ||||| ||||| | || |||||||| Sbjct 23049 TGACACTACTGATAATGTAAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 22990 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| || ||||| | | || | | |||||||| Sbjct 22989 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCAAACAGTTGCTGATTACAA 22930 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||| | ||||| || Sbjct 22929 CATCCAAGACGAGTCTAC 22912 >seq29 Length=28306 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||||||||| ||||| || ||||| || || || || | | Sbjct 27714 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 27773 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || ||||| | || || ||||| ||||| | || ||||| || Sbjct 27774 GACACCATTGACAACGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 27832 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||||| || ||| ||| |||||||| Sbjct 27833 GCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGCCGTACTCTAGCTGATTACAA 27892 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 27893 CATTCAGAAGGAGTCAAC 27910 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| | || ||||| || ||||| || || ||||| | | Sbjct 27941 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 28000 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| |||| | || | | ||||| ||||| | || ||||| | Sbjct 28001 TGACACCATTGACAATGTTAAGGCTAAGA-TCCAAGACAAGGAAGGCATTCCCCCAGACC 28059 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | || || ||||| ||||| || || || |||| | || | | ||||||| Sbjct 28060 AGCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACA 28119 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 28120 ACATCCAGAAGGAATCAAC 28138 >seq8314 Length=67656 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 25766 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTGGAGGTAGAGTCA 25825 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 25826 TCAGACACCATTGACAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCACCAGA 25884 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || ||||| || || || || || | || || ||| || || Sbjct 25885 CCAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACGCTAGCTGACTA 25944 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 25945 CAACATCCAGAAGGAGTCCAC 25965 >seq5748 Length=24579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC---TCC 23667 ||||| || || |||||||| |||| ||||| || || ||||| || || | ||| Sbjct 10420 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTTCC 10361 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| || | ||| ||||| |||| | ||| ||||||||||| | || |||| Sbjct 10360 A---ACACCATTAACAATGTTAAAGCAAAGA-TTGAAGACAAAGAAGGAATTCCCTCAGA 10305 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | ||| |||||| || |||||| | | || || | || | | ||||| Sbjct 10304 TCAACAAAGATTAGTATTTGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGATTA 10245 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| || ||||| ||||| ||| | ||| | || || || Sbjct 10244 CAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 10206 >seq8313 Length=21892 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || || || | || || || || Sbjct 1545 AAAATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 1486 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| |||| ||| |||| | || ||| ||||| ||||| | || ||||| Sbjct 1485 TCGGACACCATTGACAATGTTAAGGC-TAAGATTCAGGACAAGGAAGGCATTCCACCAGA 1427 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || || || || || || || || | || || ||| || || Sbjct 1426 CCAGCAGCGGTTGATTTTCGCGGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTA 1367 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 1366 CAACATCCAGAAGGAATCCAC 1346 >seq2718 Length=65933 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| ||||| || |||||| | || || || | | Sbjct 44746 ATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACTATCACTTTGGAGGTGGAAAGCTCC 44805 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 44806 GACACCATTGATAATGTTAAGGC-TAAGATCCAGGACAAGGAGGGAATTCCCCCAGACCA 44864 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || || | ||||| | | ||| ||||| Sbjct 44865 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTACAA 44924 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 44925 CATCCAGAAGGAGTCGAC 44942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337817656389752