Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4177 141 1e-28 seq18349 123 4e-23 seq15927 109 8e-19 >seq4177 Length=96264 Score = 141 bits (156), Expect = 1e-28 Identities = 389/596 (65%), Gaps = 0/596 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| ||||||||||| || | ||||| ||||| |||||| || || || || || Sbjct 66964 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 66905 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || || ||||| | ||||||||| | ||| ||| ||| Sbjct 66904 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 66845 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || ||||| ||| || || || || | | ||| || || | || || Sbjct 66844 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCAGACCCATCG 66785 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| | ||||| || | |||||||| ||||| || || ||| Sbjct 66784 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGG 66725 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | | | ||||| ||| ||| || | || | || | | | ||| ||||| Sbjct 66724 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 66665 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || || ||||| || || || || || || ||| | || || | || | Sbjct 66664 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACC 66605 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | || | | ||| | ||||| ||||| || || || ||| Sbjct 66604 TGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACTATGCCGTCTGAGGCGGCA 66545 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 ||||| || | ||||| | || |||| ||||| ||| || || || | ||||| | Sbjct 66544 AAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGA 66485 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 |||| | || | ||| |||||||| | |||||||| || ||| ||||| || Sbjct 66484 CGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTG 66425 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||| | ||| || | |||| || || || || ||| |||| || ||| || Sbjct 66424 TACATCTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 66369 >seq18349 Length=14259 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||||| |||| | || | | ||| |||||||| || Sbjct 4642 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 4701 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| |||||||||| | ||| Sbjct 4702 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 4761 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || ||| || | |||||| || | |||||||| || Sbjct 4762 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 4821 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| |||||||| || ||||| | || || |||||| Sbjct 4822 GCCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 4864 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | |||||||| ||||||||||||||| | | ||| | | || Sbjct 4964 AGTTCCAGCATTAAAAAGAGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 5023 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || || | || | | ||| ||||| | ||| || ||||||| ||| | ||||| Sbjct 5024 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCTACAGAGACTCTCATCAG 5083 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||||||| || || || || || | ||| ||| |||| Sbjct 5084 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 5143 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| || || || || || Sbjct 5144 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 5191 >seq15927 Length=13211 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| ||| || ||||| | |||||||||||| | |||| | || | | Sbjct 3694 ACACCCTTTCTTTTGCCACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGC 3753 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| || ||||||||| ||||||||| ||| ||| Sbjct 3754 AGCATAGGAACAATCCCATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCA 3813 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||| | ||| ||||| || || ||| || | |||||| Sbjct 3814 CGTATGTTGTGCACAGACACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 3873 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 | | || ||||| |||||||| || |||||||| ||||| | || || |||||| Sbjct 3874 GTAAGAGTATCATATATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAGCAGCTA 3933 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | ||| |||||||||||||||||||| || ||| | | || Sbjct 4131 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 4190 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| || || | ||| |||||| || || ||||| |||| || | ||||| Sbjct 4191 ATATGTCATGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 4250 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||| || || | ||| ||| |||| | || || || | ||| || |||| | Sbjct 4251 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 4310 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| ||||| || || Sbjct 4311 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 4358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712519169182080