Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20arcanum_20[genbank_20GCA_5F000612985.1_202014-03-22] 46,594 sequences; 665,186,956 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8314 122 8e-23 seq1518 114 1e-20 seq2718 111 1e-19 seq11273 105 6e-18 seq29 100 3e-16 >seq8314 Length=67656 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||| | Sbjct 25995 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 25936 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| |||||||| |||| ||||| ||||| | ||| Sbjct 25935 AGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGA 25876 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | | ||||| ||||| || Sbjct 25875 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 25817 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || |||||||| ||||| || || |||||||| || Sbjct 25816 CTCCAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 25766 >seq1518 Length=20725 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| || || | || || || | || ||||||||||| |||||||| ||| Sbjct 13842 TTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATC 13783 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 | ||||| ||||| | |||| | ||||||| | ||| | || |||| || | | Sbjct 13782 AATCGCTGCTGGTCTGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTGTC 13724 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||||||||| || || || | ||| ||||| || ||||| || || || ||||| Sbjct 13723 AATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAA 13664 Query 41854 AATCTGCATGTT 41865 |||||||| || Sbjct 13663 GATCTGCATTTT 13652 >seq2718 Length=65933 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||||| Sbjct 44972 CCACCACGCAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 44913 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || ||||| |||| | ||| ||||| | |||| Sbjct 44912 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 44853 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| | | | | | |||||| ||||| Sbjct 44852 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCA-ATGGTGTCGGAGCTTTCCAC 44794 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||||||||| Sbjct 44793 CTCCAAAGTGATAGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 44746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || |||||||| || || ||||| | Sbjct 45428 CCACCACGGAGACGGAGGACAAGGTGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCA 45369 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| |||| | ||| ||||| | || Sbjct 45368 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 45309 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || |||| || | | | ||||| |||||| Sbjct 45308 ATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCAC 45250 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| || || |||||||| Sbjct 45249 CTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCAT 45202 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||| || ||||||||||| | | ||||| | || || Sbjct 45183 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 45124 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| || || |||| | ||| ||||| | ||| | | |||||||| | | Sbjct 45123 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGT-CTT 45065 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || || | || | | | |||||| ||| ||||||| || || |||| Sbjct 45064 GGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTT 45005 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| || || |||||||| Sbjct 45004 TCCCGGTAAGAGTCTTAACAAAGATCTGCAT 44974 >seq11273 Length=79338 Score = 105 bits (116), Expect = 6e-18 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 32407 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 32348 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 ||| || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 32347 GTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 32288 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 32287 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTA 32230 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || ||||| |||||| Sbjct 32229 ATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 32191 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| ||||||||||| || || ||||||||| ||||| ||||| | || || | | | Sbjct 32635 ACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCC 32576 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || || || || || || || |||| ||||||||||| | ||||| | |||||| Sbjct 32575 ATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTT 32516 Query 41767 GTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCACCTCCACCGTT 41824 || | ||| | ||||||| || | || | || || | ||| ||||||| || Sbjct 32515 GT-CTTGAATCTTTGCTTTCACATTGTCA-ATGGTATCTGAACTCTCAACCTCCAATGTG 32458 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 32457 ATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 32420 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | || ||||| || || ||| ||||| ||||||||||| | Sbjct 32874 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 32815 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| | || || |||||||| || || || || || | |||||| || | ||| Sbjct 32814 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 32755 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | ||||||| || | | | ||| || ||| || Sbjct 32754 ATCCCT-TCCTTGTCC-TGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCT---CT 32700 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 32699 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 32648 >seq29 Length=28306 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||||||||| || || | Sbjct 27940 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 27881 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| || || || ||||| | ||| ||||| | |||| Sbjct 27880 AGAGTACGGCCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 27821 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||||||| || | || |||| |||| | | | ||||| ||| || Sbjct 27820 ATGCCTTCCTTGTCC-TGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCT---TTC 27765 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || || || || || |||||||| Sbjct 27764 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 27714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462034742592800