Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6171 105 1e-17 seq10413 104 5e-17 seq26510 100 6e-16 seq16283 100 6e-16 seq34649 98.7 2e-15 seq30029 98.7 2e-15 seq25429 98.7 2e-15 seq23768 98.7 2e-15 seq19250 98.7 2e-15 seq12950 98.7 2e-15 seq9085 98.7 2e-15 seq7758 98.7 2e-15 seq3866 98.7 2e-15 seq2955 98.7 2e-15 seq1561 98.7 2e-15 seq890 98.7 2e-15 seq352 98.7 2e-15 seq19381 96.9 7e-15 seq1364 95.1 3e-14 seq1285 93.3 9e-14 seq8720 89.7 1e-12 seq5932 89.7 1e-12 seq32320 86.0 1e-11 seq63347 84.2 5e-11 seq7117 84.2 5e-11 >seq6171 Length=36435 Score = 105 bits (116), Expect = 1e-17 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444 ||| ||| |||| || || || | |||| ||||||| | ||||| ||| |||| ||| Sbjct 5017 AATTATTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGC 5076 Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 || | || ||||| | || | ||| | | ||||| ||||| || || || | | Sbjct 5077 TCTGGTGGGGATGAATGGAGATTTGATGAGTAAATACATAGAATTTGTCGCTGATAGATT 5136 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 || | ||| | ||||| || || ||||||| || |||| || |||| | ||||| Sbjct 5137 GTTGGATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGA 5196 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 ||| ||| || ||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 5197 GCTGATTAGCCTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAA 5256 Query 230625 GCCTGGTGTGATG 230637 | | ||||||| Sbjct 5257 GGCATCTGTGATG 5269 >seq10413 Length=47887 Score = 104 bits (114), Expect = 5e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 165699 TTAA-AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTC 165757 |||| || | |||||||||||||||||| |||||||||| || || |||| || |||||| Sbjct 37635 TTAACAAAGTTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTC 37694 Query 165758 GTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||| ||||| Sbjct 37695 GTGGGTTCGAGCCCCACGGTGGGC 37718 >seq26510 Length=8090 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 3526 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3585 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3586 CCCCACGGTGGGC 3598 >seq16283 Length=6447 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1218 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1277 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1278 CCCCACGGTGGGC 1290 >seq34649 Length=123906 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 68620 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68561 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 68560 CCCACGGTGGGC 68549 >seq30029 Length=20978 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8703 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8762 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8763 CCCACGGTGGGC 8774 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| | |||||||| || || |||| || |||||||||||||||||| Sbjct 9211 GCCCGTCTAGCTCAGTTGATAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9270 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9271 CCCACGGTGGGC 9282 >seq25429 Length=48656 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14531 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14590 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14591 CCCACGGTGGGC 14602 >seq23768 Length=47292 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 32116 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32175 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32176 CCCACGGTGGGC 32187 >seq19250 Length=59066 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 52848 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52789 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52788 CCCACGGTGGGC 52777 >seq12950 Length=66819 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 39287 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39228 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39227 CCCACGGTGGGC 39216 >seq9085 Length=31579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8178 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8119 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8118 CCCACGGTGGGC 8107 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8019 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7960 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 7959 CCCACGGTGG 7950 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8354 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8295 Query 165770 CCCACGATG 165778 |||||| || Sbjct 8294 CCCACGGTG 8286 >seq7758 Length=116482 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 37136 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37195 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37196 CCCACGGTGGGC 37207 >seq3866 Length=5307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 689 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 630 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 629 CCCACGGTGGGC 618 >seq2955 Length=76102 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 30645 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30704 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30705 CCCACGGTGGGC 30716 >seq1561 Length=13523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5017 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4958 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4957 CCCACGGTGGGC 4946 >seq890 Length=49113 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18041 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18100 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18101 CCCACGGTGGGC 18112 >seq352 Length=259010 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 163477 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 163536 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 163537 CCCACGGTGGGC 163548 >seq19381 Length=18147 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 17022 TGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16963 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 16962 CCCCACGGTGGGC 16950 >seq1364 Length=150741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| |||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 73227 GCCAGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 73286 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 73287 CCCACGGTGGGC 73298 >seq1285 Length=67222 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| | |||||||||||||||| |||||||||| || || |||| || ||||||||| Sbjct 8211 AAAACAATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 8270 Query 165761 GGT--TCGAGCCCCACGATGGGC 165781 ||| |||||||||||| ||||| Sbjct 8271 GGTTCTCGAGCCCCACGGTGGGC 8293 >seq8720 Length=136621 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 101126 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 101067 Query 165770 CCCA 165773 |||| Sbjct 101066 CCCA 101063 >seq5932 Length=20723 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||| |||||||||| || || |||| || ||||||| ||||||||| Sbjct 11863 TGCCCTTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAG 11922 Query 165769 CCCCACGATGGG 165780 ||||||| |||| Sbjct 11923 CCCCACGGTGGG 11934 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||| ||||||||||| |||||||||| || || |||| || ||||||| ||||||||| Sbjct 12261 TGCCCTTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAG 12320 Query 165769 CCCCACGATGGG 165780 ||||||| |||| Sbjct 12321 CCCCACGGTGGG 12332 >seq32320 Length=85309 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TCGA 165767 |||||||||||||||| |||||||||| || || |||| || |||||||||| | |||| Sbjct 57181 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGATTCTCGA 57240 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 57241 GCCCCACGGTGGGC 57254 >seq63347 Length=14613 Score = 84.2 bits (92), Expect = 5e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 8958 TCTAGCTCAGTTGGTAGAGCACCGGACTTTTAATCCGAGGGTCGTGGGTTCGAGCCCCAC 9017 Query 165775 G 165775 | Sbjct 9018 G 9018 >seq7117 Length=11210 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||| ||||||||| |||||||||| || || |||| || ||||||||||||| || | Sbjct 1557 GCCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGATC 1616 Query 165770 CCCACGATGGGCAT 165783 ||||| ||||||| Sbjct 1617 CCCACAGTGGGCAT 1630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056961138252320