Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 105 1e-17
seq10413 104 5e-17
seq26510 100 6e-16
seq16283 100 6e-16
seq34649 98.7 2e-15
seq30029 98.7 2e-15
seq25429 98.7 2e-15
seq23768 98.7 2e-15
seq19250 98.7 2e-15
seq12950 98.7 2e-15
seq9085 98.7 2e-15
seq7758 98.7 2e-15
seq3866 98.7 2e-15
seq2955 98.7 2e-15
seq1561 98.7 2e-15
seq890 98.7 2e-15
seq352 98.7 2e-15
seq19381 96.9 7e-15
seq1364 95.1 3e-14
seq1285 93.3 9e-14
seq8720 89.7 1e-12
seq5932 89.7 1e-12
seq32320 86.0 1e-11
seq63347 84.2 5e-11
seq7117 84.2 5e-11
>seq6171
Length=36435
Score = 105 bits (116), Expect = 1e-17
Identities = 175/253 (69%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 230385 AATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG 230444
||| ||| |||| || || || | |||| ||||||| | ||||| ||| |||| |||
Sbjct 5017 AATTATTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGC 5076
Query 230445 CCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504
|| | || ||||| | || | ||| | | ||||| ||||| || || || | |
Sbjct 5077 TCTGGTGGGGATGAATGGAGATTTGATGAGTAAATACATAGAATTTGTCGCTGATAGATT 5136
Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564
|| | ||| | ||||| || || ||||||| || |||| || |||| | |||||
Sbjct 5137 GTTGGATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGA 5196
Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624
||| ||| || ||||||||||| || ||||| || ||| | || | || |||||||
Sbjct 5197 GCTGATTAGCCTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAA 5256
Query 230625 GCCTGGTGTGATG 230637
| | |||||||
Sbjct 5257 GGCATCTGTGATG 5269
>seq10413
Length=47887
Score = 104 bits (114), Expect = 5e-17
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 165699 TTAA-AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTC 165757
|||| || | |||||||||||||||||| |||||||||| || || |||| || ||||||
Sbjct 37635 TTAACAAAGTTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTC 37694
Query 165758 GTGGGTTCGAGCCCCACGATGGGC 165781
|||||||||||||||||| |||||
Sbjct 37695 GTGGGTTCGAGCCCCACGGTGGGC 37718
>seq26510
Length=8090
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 3526 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3585
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 3586 CCCCACGGTGGGC 3598
>seq16283
Length=6447
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 1218 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1277
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 1278 CCCCACGGTGGGC 1290
>seq34649
Length=123906
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 68620 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68561
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 68560 CCCACGGTGGGC 68549
>seq30029
Length=20978
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8703 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8762
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8763 CCCACGGTGGGC 8774
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| | |||||||| || || |||| || ||||||||||||||||||
Sbjct 9211 GCCCGTCTAGCTCAGTTGATAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9270
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9271 CCCACGGTGGGC 9282
>seq25429
Length=48656
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 14531 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14590
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 14591 CCCACGGTGGGC 14602
>seq23768
Length=47292
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 32116 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 32175
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 32176 CCCACGGTGGGC 32187
>seq19250
Length=59066
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 52848 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52789
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 52788 CCCACGGTGGGC 52777
>seq12950
Length=66819
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 39287 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39228
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 39227 CCCACGGTGGGC 39216
>seq9085
Length=31579
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8178 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8119
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8118 CCCACGGTGGGC 8107
Score = 95.1 bits (104), Expect = 3e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8019 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7960
Query 165770 CCCACGATGG 165779
|||||| |||
Sbjct 7959 CCCACGGTGG 7950
Score = 93.3 bits (102), Expect = 9e-14
Identities = 62/69 (90%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8354 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8295
Query 165770 CCCACGATG 165778
|||||| ||
Sbjct 8294 CCCACGGTG 8286
>seq7758
Length=116482
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 37136 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37195
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 37196 CCCACGGTGGGC 37207
>seq3866
Length=5307
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 689 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 630
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 629 CCCACGGTGGGC 618
>seq2955
Length=76102
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 30645 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30704
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 30705 CCCACGGTGGGC 30716
>seq1561
Length=13523
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5017 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4958
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4957 CCCACGGTGGGC 4946
>seq890
Length=49113
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 18041 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18100
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 18101 CCCACGGTGGGC 18112
>seq352
Length=259010
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 163477 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 163536
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 163537 CCCACGGTGGGC 163548
>seq19381
Length=18147
Score = 96.9 bits (106), Expect = 7e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 17022 TGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16963
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 16962 CCCCACGGTGGGC 16950
>seq1364
Length=150741
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||| |||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 73227 GCCAGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 73286
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 73287 CCCACGGTGGGC 73298
>seq1285
Length=67222
Score = 93.3 bits (102), Expect = 9e-14
Identities = 71/83 (86%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760
||||| | |||||||||||||||| |||||||||| || || |||| || |||||||||
Sbjct 8211 AAAACAATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 8270
Query 165761 GGT--TCGAGCCCCACGATGGGC 165781
||| |||||||||||| |||||
Sbjct 8271 GGTTCTCGAGCCCCACGGTGGGC 8293
>seq8720
Length=136621
Score = 89.7 bits (98), Expect = 1e-12
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 101126 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 101067
Query 165770 CCCA 165773
||||
Sbjct 101066 CCCA 101063
>seq5932
Length=20723
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||| ||||||||||| |||||||||| || || |||| || ||||||| |||||||||
Sbjct 11863 TGCCCTTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAG 11922
Query 165769 CCCCACGATGGG 165780
||||||| ||||
Sbjct 11923 CCCCACGGTGGG 11934
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||| ||||||||||| |||||||||| || || |||| || ||||||| |||||||||
Sbjct 12261 TGCCCTTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAG 12320
Query 165769 CCCCACGATGGG 165780
||||||| ||||
Sbjct 12321 CCCCACGGTGGG 12332
>seq32320
Length=85309
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TCGA 165767
|||||||||||||||| |||||||||| || || |||| || |||||||||| | ||||
Sbjct 57181 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGATTCTCGA 57240
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 57241 GCCCCACGGTGGGC 57254
>seq63347
Length=14613
Score = 84.2 bits (92), Expect = 5e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774
||||||||||| |||||||| || ||||||||||| | |||||||||||||||||||||
Sbjct 8958 TCTAGCTCAGTTGGTAGAGCACCGGACTTTTAATCCGAGGGTCGTGGGTTCGAGCCCCAC 9017
Query 165775 G 165775
|
Sbjct 9018 G 9018
>seq7117
Length=11210
Score = 84.2 bits (92), Expect = 5e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||| ||||||||| |||||||||| || || |||| || ||||||||||||| || |
Sbjct 1557 GCCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGATC 1616
Query 165770 CCCACGATGGGCAT 165783
||||| |||||||
Sbjct 1617 CCCACAGTGGGCAT 1630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056961138252320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |