Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6171 145 8e-30 >seq6171 Length=36435 Score = 145 bits (160), Expect = 8e-30 Identities = 381/563 (68%), Gaps = 19/563 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 4966 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 4907 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||| ||||||| | || | | ||| |||| Sbjct 4906 TCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGA 4848 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || |||||| | || | || | Sbjct 4847 AAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCAT--C 4790 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 4789 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCAC 4731 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| |||| |||| || | ||| ||||||||| Sbjct 4730 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTAC 4672 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| || ||||| || Sbjct 4671 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCCTCAGC 4613 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 4612 AACCTGGACGTCTTTCATGAA--CCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAG 4555 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| || | | || | ||||||| | |||| | ||||| || | | | Sbjct 4554 GCGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCC 4495 Query 16676 CAAT--CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACT 16732 || | | || ||| |||| ||| ||||||||| |||||| |||| | |||| Sbjct 4494 CAGTGACGATT--ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGAT-GCCATG 4438 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 || || || ||||||| |||||| Sbjct 4437 GCTTTCTTGTACATTTCCCAAAT 4415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511007416420480