Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq16715 107 2e-18 seq25243 86.0 5e-12 >seq16715 Length=90750 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| ||||| ||||| || |||||| ||| |||| | | Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || ||||| || | || ||| || Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || || |||||||| | || |||||||||||||| Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||||||||| || ||||| | ||||| Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 54128 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| ||||| || |||||| || |||| | | Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||| ||| || ||||| ||| | || |||||| Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 65660 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| ||||| || |||||||| | || | |||||||||||| Sbjct 65659 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAT 65600 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||||||||| || ||||| | ||||| Sbjct 65599 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 65568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| || || ||||| |||||||| || |||||||| |||||| | ||| | || || Sbjct 54910 AGACCAGCAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGA 54851 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||| |||||||| || ||||||||| ||||| | || | || || ||| Sbjct 54850 TTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTCCGCGGTGGG 54796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| || || ||||| |||||||| || |||||||| |||||| | ||| | | || Sbjct 55113 AGACCAGCAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCACTGA 55054 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||| |||||||| || ||||||||| ||||| | || | || || ||| Sbjct 55053 TTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTCCGCGGTGGG 54999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| || || ||||| ||| || ||| | | Sbjct 66464 AATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 66405 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || || || || ||||| | ||| ||| || Sbjct 66404 CGACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 66345 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| || |||||||| ||||| || || || || | || | || |||||||| Sbjct 66344 GCAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAA 66285 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| || |||||| ||||| Sbjct 66284 CATCCAGAAGGAATCAACCCTTCACTTGGTG 66254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 28954 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 29013 ||||| | ||||| || || ||||||| | || || || || || ||| || || Sbjct 66927 GTGTACAGATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGG 66868 Query 29014 AACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 29073 || | |||| || | | | | |||| || || || || ||||| | ||| Sbjct 66867 AAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATACCCC 66808 Query 29074 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCG 29133 || || || || || |||||||| ||||| || || ||||| | ||| | |||| Sbjct 66807 CGGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGTACTCTAGCCG 66748 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||||||||||||||||| || ||||| ||| ||||| | || | || || ||| Sbjct 66747 ATTACAATATTCAGAAGGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 66692 >seq25243 Length=7086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || |||||| ||||| Sbjct 5270 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAA 5329 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||| |||| |||||||| |||||||| ||||| |||||||| Sbjct 5330 GATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 5379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428003651955920