Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 104 2e-17
seq25243 86.0 5e-12
>seq16715
Length=90750
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || ||||||| ||||| ||||| || |||||| ||| |||| | |
Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| || ||| || ||||| || | || ||| ||
Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || ||||| || || || ||||||||| | || ||||||||||||||
Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||||| |||||||| || ||||| | |||||
Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 54128
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | || || ||||| ||||| || |||||| || |||| | |
Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | | ||| ||| ||| || ||||| ||| | || ||||||
Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 65660
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
||||| | || ||||| ||||| || ||||||||| | || | ||||||||||||
Sbjct 65659 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAT 65600
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
||||| |||||||| || ||||| | |||||
Sbjct 65599 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 65568
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207
||| || || ||||| |||||||| || |||||| | |||||| | ||| | || ||
Sbjct 54910 AGACCAGCAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGA 54851
Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262
||||||||| || ||||| || ||||||||| ||||| | || | || || |||
Sbjct 54850 TTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTCCGCGGTGGG 54796
>seq25243
Length=7086
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||||||||| | || ||||| || ||||| || ||||| || ||||||||||||
Sbjct 5270 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAA 5329
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| ||| |||| |||||||| ||||| || ||||| ||||||||
Sbjct 5330 GATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 5379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410478060708896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |