Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6347 131 3e-25 seq32996 109 8e-19 seq25243 109 8e-19 seq54467 102 1e-16 seq31566 102 1e-16 seq43689 100 4e-16 seq51266 98.7 1e-15 seq16715 95.1 2e-14 seq15487 93.3 6e-14 >seq6347 Length=16439 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | ||||| || || || || | ||| |||| | Sbjct 13015 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATTACCCTTGAGGTTGAGAGTTCT 12956 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||||||||| ||||| || |||||||| || Sbjct 12955 GACACCATTGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 12896 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||| || ||||| | |||||| | | || ||| |||||| || Sbjct 12895 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTAGCAGATTACAAC 12836 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||||||| | |||||||| | || || | |||||||| Sbjct 12835 ATTCAAAAGGAATCAACTCTCCATTTGGTGCTGCGCCTAAGGGGTGGTAT 12786 Score = 114 bits (126), Expect = 2e-20 Identities = 174/244 (71%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| |||||| | |||||| | || || || || || || | ||| | || ||| Sbjct 12560 AATGCAGATATTTGTCAAGACATTGACTGGAAAGACGATTACCTTGGAGGTGGAGAGCTC 12501 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| ||| |||| | || ||| ||||| ||||| || ||||| || || || | Sbjct 12500 A-GATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACC 12442 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||| || || || | |||||| |||| || | | || |||| Sbjct 12441 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTTGCTGACTATA 12382 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAAT 124775 | ||||| |||||||||||| | || | ||| | ||| | || ||||| | || | ||| Sbjct 12381 ACATTCAGAAAGAATCAACTCTTCACCTTGTTCTTCGTCTCCGTGGTGGCTTTTGAGAAT 12322 Query 124776 TCAT 124779 | || Sbjct 12321 TTAT 12318 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||||| ||||| || || || || || || || || ||| | |||||||| || || Sbjct 12048 GAAGATTCAGGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGTAA 11989 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || | |||||| |||| || | | || ||||| ||||| |||||||||||| | || Sbjct 11988 GCAGCTGGAGGATGGTCGCACCCTTGCTGACTATAACATTCAGAAAGAATCAACTCTTCA 11929 Query 124742 TTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTCAT 124779 | ||| | ||| | || ||||| | || | |||| || Sbjct 11928 CCTTGTTCTTCGTCTCCGTGGTGGCTTTTGAGAATTTAT 11890 >seq32996 Length=3898 Score = 109 bits (120), Expect = 8e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || || || || || ||||||||| | ||| | || ||| Sbjct 2001 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 1942 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || ||| |||| | ||| ||||||||||| || |||||||| || || || | Sbjct 1941 A-GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 1883 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| | Sbjct 1882 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 1823 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || || | || | || | || | || |||||||| Sbjct 1822 ACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 1771 Score = 107 bits (118), Expect = 3e-18 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 1484 -GATACTATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 1427 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | ||||| | Sbjct 1426 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACA 1367 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 1366 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 1307 Score = 104 bits (114), Expect = 4e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || || || ||| | ||| |||| || | Sbjct 1316 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1257 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || ||||||||||| || ||||| || || || || Sbjct 1256 -GATACCATTGACAACGTCAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCA 1198 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| ||||| ||| | |||||| | | || || | |||||| || Sbjct 1197 GCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAA 1138 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 1137 CATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 1079 >seq25243 Length=7086 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| || |||||||| Sbjct 5267 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTG 5326 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| | | ||||| || ||||| |||||||||||| | ||| | ||| Sbjct 5327 GAAGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTT 5386 >seq54467 Length=1408 Score = 102 bits (112), Expect = 1e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| | |||| || |||||||| || || ||| ||||||||| || || Sbjct 843 AAAATTCAAGACAGGAAAGGCATCCCACCTGACCAGCAGAGG-TTATTTTTGTTGGGAAG 901 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | || ||| |||||| ||||||||||| ||||||||| | ||| Sbjct 902 CAGCTTGAGGATGGAAGGACTCTAGCAGATTACAATATTCAAAAGGAATCAACTCTCCAT 961 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || | | |||||||| Sbjct 962 TTGGTGTTGCGCCCAAGGGGTGGTAT 987 >seq31566 Length=6582 Score = 102 bits (112), Expect = 1e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| | |||| || |||||||| || || ||| ||||||||| || || Sbjct 748 AAAATTCAAGACAGGAAAGGCATCCCACCTGACCAGCAGAGG-TTATTTTTGTTGGGAAG 690 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | || ||| |||||| ||||||||||| ||||||||| | ||| Sbjct 689 CAGCTTGAGGATGGAAGGACTCTAGCAGATTACAATATTCAAAAGGAATCAACTCTCCAT 630 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || | | |||||||| Sbjct 629 TTGGTGTTGCGCCCAAGGGGTGGTAT 604 >seq43689 Length=21515 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| || ||||| | ||| | Sbjct 1294 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 1353 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || || || ||||| ||||| || || || ||||| Sbjct 1354 GATACAATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 1413 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| ||||| || Sbjct 1414 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 1473 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| || ||||| Sbjct 1474 ATCCAGAAGGAGTCTACCCTCCATTTGGTGCTCCGTCTACGTGGAGGTAT 1523 >seq51266 Length=1200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||||| |||||| | ||||| || || || | | | ||| |||| || | Sbjct 1000 ATGCAAATATTTATCAAGACATTGACAGGGAAGACAATTAATTTGGAGGTTGAGAGTTCA 941 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| ||||| ||||| || || | | Sbjct 940 -GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAAGAGGGTATTCCTCCAAACC 883 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||| | ||| | ||| | || ||| | | || || | |||||| | Sbjct 882 AGCAGAGATTGATCTTTTCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACA 823 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT-TTACGAGGTGGTATTAAAAAT 124775 | ||||| ||||||||||| ||| | ||| | ||| |||| |||||| || ||| | Sbjct 822 ACATTCAGAAAGAATCAACCCTGCCCCTTGTTCTTCGTCTTAC-AGGTGGCATGCAAATT 764 Query 124776 T 124776 | Sbjct 763 T 763 >seq16715 Length=90750 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| ||||| || | ||| | ||| | Sbjct 66007 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTCT 65948 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 65947 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 65888 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| || | ||||| | || || | | ||||| || Sbjct 65887 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAAC 65828 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || ||||| || Sbjct 65827 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGTGGTGGGAT 65778 >seq15487 Length=17016 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 16816 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 16757 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || | | Sbjct 16756 -GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAAACC 16699 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||| | ||| | || ||| | | || || | |||||| | Sbjct 16698 AGCAGAGATTGATCTTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACA 16639 Query 124717 ATATTCAAAAAGAATCAAC 124735 | ||||| ||||||||||| Sbjct 16638 ACATTCAGAAAGAATCAAC 16620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754854808115200