Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6347 104 3e-17 seq25243 100 4e-16 >seq6347 Length=16439 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| |||| ||||||||| | ||| || ||||| ||||||||||| |||| ||| Sbjct 13746 ATGTTATAGTCTGCAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCAAAGATCAGCCTT 13805 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || ||||| Sbjct 13806 TGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 13837 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || || | | |||||||| | ||| ||||| ||| || || || ||||||| Sbjct 12789 CCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGA-ATGTTGTAATCTGC 12847 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| || | ||| || | ||||| |||||||||||||| || ||||| || || || Sbjct 12848 TAGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 12907 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 12908 GATGCCTTCCTTATCTTG 12925 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 ||| || || || | |||||||| | ||| || || ||||| || ||||| |||||||| Sbjct 13289 TATGTTGTAGTCAGCTAGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCT 13348 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || ||||| Sbjct 13349 CTGCTGATCTGGAGGAATTCCTTCCTTGTCTTG 13381 >seq25243 Length=7086 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | || | ||| | ||| |||||||| || || ||||| Sbjct 5406 GTTCCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 5347 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| | ||| || |||||||| ||||||||||||| ||| |||||||| ||| Sbjct 5346 GCCAGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 5287 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 5286 GGTATGCCTTCTTTATCCTG 5267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742934701690880