Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3506 102 5e-17
seq16715 100 2e-16
seq43689 96.9 2e-15
seq32996 96.9 2e-15
seq24164 95.1 8e-15
seq6200 91.5 1e-13
seq63460 87.8 1e-12
seq51266 87.8 1e-12
>seq3506
Length=94386
Score = 102 bits (112), Expect = 5e-17
Identities = 160/222 (72%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACG 34230
||||| ||||| || |||| ||| || |||||| ||||||||||| | | || || |
Sbjct 52610 AGCCTTAGCACTAGATGTAGAGTTGATTTTTTCTGGATGTTGTAGTCCGCCAAGGTG-TG 52552
Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTC 34288
| | || || | |||||| || || ||||| |||| |||||||| || || | |
Sbjct 52551 GCCATCCTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAAGG--ATTCCT 52494
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347
|| ||||| |||| || || |||| || | | || | || | | ||||||| ||||
Sbjct 52493 TCTTTGTCTTGTATC-TTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAG 52435
Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||||| | ||| ||||||||||| || ||||||||
Sbjct 52434 AGTAATGGTTTAACTGGTCAGAGTTTTCACGAATATCTGCAT 52393
>seq16715
Length=90750
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | ||| || ||||| || ||||| |||| || |||| ||||
Sbjct 66708 AGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCT 66767
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||||||||| || || |||| ||||||||| ||| | || ||||||||
Sbjct 66768 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGTATGCCTTCCTTGTCC 66827
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | | | | || | || | ||| || || | ||||| ||
Sbjct 66828 TGGATC-TTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGT 66886
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || ||||| ||||| |||||||||||||||
Sbjct 66887 CTTTCCAGTGAGGGTTTTGACAAAGATCTGCATC 66920
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||||||| ||| | ||| ||||| || |||||||| || |
Sbjct 66464 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGC 66523
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| |||| || | |||||||| || || || |||| |||||||| |||
Sbjct 66524 GAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGG 66583
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||||| ||||| ||| | || | | || | || | ||| ||
Sbjct 66584 GATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCTGAGCTTTCCAC 66643
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || ||||| ||||| |||||||||||||||
Sbjct 66644 CTCGAGGGTGATTGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCATC 66692
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219
|| || || || || | || || ||||| | |||| || || || |||||||||||
Sbjct 65322 AAACCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCC 65381
Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGAC 34278
| ||| | | || || | |||||| ||||| || || |||| |||||||| || |
Sbjct 65382 GCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGC 65441
Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338
||| | | ||||||||| ||||| ||| | || | | || | ||| | ||
Sbjct 65442 GGG-ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTCTC 65500
Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||| ||||||||||| || || | || |||||||| ||||||||
Sbjct 65501 CACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 65551
>seq43689
Length=21515
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| || | ||| || ||||| |||||||| || | || ||| ||||
Sbjct 1505 AGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCC 1446
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
||||||||||| || ||||| || |||| ||||| || ||| | | ||||| ||
Sbjct 1445 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCC 1386
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||| | ||| || || | ||||| ||
Sbjct 1385 TGGATCTTGGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 1326
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| ||||||||||||||||||||||||||||||
Sbjct 1325 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1293
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| | || ||| |||| ||||| ||||| || |||||
Sbjct 1940 TCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCCTCCAATTGCTTTCCAGCGAAG 1881
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | || ||||||||| ||| | | ||||| || ||||| ||| | | |
Sbjct 1880 ATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTG 1821
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | |||| ||| || |||| |||||||| || ||||| ||||| || ||
Sbjct 1820 TCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACG 1761
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 1760 AAGATCTGCAT 1750
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || | |||||||||||||| ||| | || || ||||| ||||||||||| |
Sbjct 2433 TCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 2374
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || || | ||| || || ||||| || | || ||||||||| |||
Sbjct 2373 AAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 2314
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||| | || | | || | |||| || ||
Sbjct 2313 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 2254
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | || ||||| || ||||| || || || ||||| ||||||||
Sbjct 2253 CTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 2206
>seq32996
Length=3898
Score = 96.9 bits (106), Expect = 2e-15
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || ||||| || || || || | |||| |||||||| || |||||||| |
Sbjct 264 CCACCACGGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGCA 323
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| ||| | || || | |||||| || || || || |||| ||| || || | |||
Sbjct 324 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCTGGTGGG 383
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || |||||||| ||||||| ||||| | || | | || | ||| | || |
Sbjct 384 ATCCCT-TCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 441
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394
| |||| ||||| || || || || ||||| |||||||||||||||||| |||
Sbjct 442 CCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTC 495
>seq24164
Length=196930
Score = 95.1 bits (104), Expect = 8e-15
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
||||||| |||||||| || | || ||| | || || | |||||| || ||||| |
Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29685
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318
| | ||||||||||| || | | |||||||| ||||| ||||| | || |
Sbjct 29684 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTA-GCTTTGACATTG 29626
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| ||||||| || || | |||||| || || || || |||||||||||
Sbjct 29625 TCAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 29566
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 29565 AAGATCTGCAT 29555
>seq6200
Length=22545
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||| || || | ||| || ||||| ||||||||||||| || ||| | ||
Sbjct 22083 AGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCC 22142
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || |||||||| | ||||||||||| ||| | | ||||||||
Sbjct 22143 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 22202
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | || | || | |||| || || || || | ||||| ||
Sbjct 22203 TGGATC-TTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT 22261
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || |||||||| ||||||||||||
Sbjct 22262 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 22295
>seq63460
Length=19418
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||||||||||| | ||| ||| | || || | |||||| |||||||||
Sbjct 4946 TCCTTTTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTTCCTGCGAAA 5005
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | || ||||||||| || | || |||||||| ||||| ||| | || |
Sbjct 5006 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACATTG 5065
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | || || || || | || || || ||||| || || || ||||||
Sbjct 5066 TCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACA 5125
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 5126 AAGATCTGCAT 5136
>seq51266
Length=1200
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || ||| | || || || || | |||| ||||| | || |||||||| |
Sbjct 315 TCCACCACGGAGCTTGAGGACAAGATGAAGAGTAGACTCTTTGCGGATATTGTAGTCTGT 374
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || || | |||||| || || || ||||||| ||| || || ||
Sbjct 375 AAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGG 434
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||||||| ||||||| ||||| | || | | || | ||| | || |
Sbjct 435 AATCC-CTCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 492
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394
| |||| ||||| || || || || ||||| |||||||||||||||||| |||
Sbjct 493 CCTCCATTGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTC 546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322821326819840
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