Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6171 145 7e-30 >seq6171 Length=36435 Score = 145 bits (160), Expect = 7e-30 Identities = 553/857 (65%), Gaps = 27/857 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || ||||| || | ||||||||| ||||||||||| || || |||| || ||| Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CAT--CCCAATTCCAAC 16060 ||||| ||||||| ||||| | || || | ||| | | | ||| ||||| | | Sbjct 5196 TCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCATAACCCAAAGCATCC 5140 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || |||||||| || ||||||||||| || | |||| ||||| | ||||| || | Sbjct 5139 AACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACC 5080 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | ||| | || || | || | ||||||| | || || || || Sbjct 5079 AGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATA 5020 Query 16181 ATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACA 16236 || | || ||| | || | ||| | | ||| || | || || ||| Sbjct 5019 ATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAA---ACA 4964 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||||| ||||| |||||||| || |||||||| ||||| || || | || Sbjct 4963 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 4904 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA----CCAGAAAAGA 16352 ||||||| || |||||||| | ||||||||| | || ||| || |||| Sbjct 4903 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCG----AACAGAAGCTTCCGCTGAAGA 4848 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412 | || |||||||| ||||| || ||||| ||||| || | ||| | || | Sbjct 4847 AAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTT---TCGGAACCAT 4791 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 | ||||| ||||| || || || | || |||||| ||| |||| |||||| Sbjct 4790 CGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCAC 4731 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 || || | | ||||| | ||| || || | || | || ||||| |||| Sbjct 4730 GGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACA 4671 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGAT 16591 | || ||||| |||||||| || || || || || ||||| |||||| | || || | Sbjct 4670 TCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCCTCAGCA 4612 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 | || || || |||||| |||| | ||| || ||| || || || || Sbjct 4611 ACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCG 4552 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAG 16711 |||||||| ||||| | || | || |||| | |||| || || ||| |||| Sbjct 4551 GCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAG 4492 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 | | | ||| |||| |||||| |||||||| ||||| ||||| || | || || Sbjct 4491 TGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTC 4432 Query 16772 TTATACATTTTCCATAT 16788 || ||||||| ||| || Sbjct 4431 TTGTACATTTCCCAAAT 4415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462143932950400