Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25243 104 2e-17 seq6347 104 2e-17 >seq25243 Length=7086 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || || | ||||| ||||||||||| ||||||||||| || || Sbjct 5404 TCCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 5345 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||||||||||||||| || ||| | || ||||| || ||||| || Sbjct 5344 CAGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5285 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 5284 TATGCCTTCTTTATC 5270 >seq6347 Length=16439 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| ||||| || || ||||| ||||||||||| || Sbjct 13245 CCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGCT 13304 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||| ||||| || ||| |||| | ||| || ||||| || Sbjct 13305 AGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 13364 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| | |||||| | ||| ||||||| | ||| Sbjct 13365 ATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 13424 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || |||||||| ||||| ||||| || ||||| Sbjct 13425 TCAAGAGTAATTGTCTTCCCGGTCAAGGTTTTCACAAAGATCTGCAT 13471 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || || || ||||| ||||||||||| || Sbjct 13473 CCACCACGCAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCT 13532 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || || ||||| || ||| |||| | ||| || ||||| || Sbjct 13533 AGAGTTCTTCCATCCTCTAACTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGAGGA 13592 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| | |||||| | ||| ||||||| | ||| Sbjct 13593 ATCCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 13652 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || || ||||| ||||| ||||| || ||||| Sbjct 13653 TCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCAT 13699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||| | || |||| || || |||||||| |||||||||||||| || || Sbjct 12789 CCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCT 12848 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| || | ||||| || ||| | || | || || || || || Sbjct 12849 AGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 12908 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| ||||| |||||| | ||| |||||| ||| Sbjct 12909 ATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACC 12968 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| ||| | || || |||||||| || |||||||| ||||| Sbjct 12969 TCAAGGGTAATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 13015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379049665093680