Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq25243 104 2e-17
seq6347 104 2e-17
>seq25243
Length=7086
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || || || | ||||| ||||||||||| ||||||||||| || ||
Sbjct 5404 TCCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 5345
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| ||| || ||||||||||||||| || ||| | || ||||| || ||||| ||
Sbjct 5344 CAGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5285
Query 18218 CACGCCTTCCTTATC 18232
| |||||| |||||
Sbjct 5284 TATGCCTTCTTTATC 5270
>seq6347
Length=16439
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| ||||| || || ||||| ||||||||||| ||
Sbjct 13245 CCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGCT 13304
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||| ||||| ||||| || ||| |||| | ||| || ||||| ||
Sbjct 13305 AGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 13364
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||| || |||| | |||||| | ||| ||||||| | |||
Sbjct 13365 ATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 13424
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || | || |||||||| ||||| ||||| || |||||
Sbjct 13425 TCAAGAGTAATTGTCTTCCCGGTCAAGGTTTTCACAAAGATCTGCAT 13471
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||| || || || || ||||| ||||||||||| ||
Sbjct 13473 CCACCACGCAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCT 13532
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||| || || ||||| || ||| |||| | ||| || ||||| ||
Sbjct 13533 AGAGTTCTTCCATCCTCTAACTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGAGGA 13592
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| |||| | |||||| | ||| ||||||| | |||
Sbjct 13593 ATCCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 13652
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| || || | || || ||||| ||||| ||||| || |||||
Sbjct 13653 TCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCAT 13699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| ||| | || |||| || || |||||||| |||||||||||||| || ||
Sbjct 12789 CCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCT 12848
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | ||| || | ||||| || ||| | || | || || || || ||
Sbjct 12849 AGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 12908
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||||||| ||||| |||||| | ||| |||||| |||
Sbjct 12909 ATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCAACC 12968
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||| ||| | || || |||||||| || |||||||| |||||
Sbjct 12969 TCAAGGGTAATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 13015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379049665093680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |