Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq6347 98.7 8e-16
seq54467 87.8 2e-12
seq31566 87.8 2e-12
>seq6347
Length=16439
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| || || ||||||||||| || || ||| | || || |||
Sbjct 12787 ATGCAGATTTTTGTGAAGACATTAACCGGCAAGACAATCACCCTGGAGGTTGAAAGTTCA 12728
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | || |||| ||| || | |||||||| | || ||||||
Sbjct 12727 GACACCATTGATAACGTGAAGGCAAAGATCCAAGACAAAGAAGGGATTCCACCAGACCAG 12668
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| |||||||| | ||| ||||| || || || ||| | |||| | |||||||
Sbjct 12667 CAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAAT 12608
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||||||||| |||| || ||||| ||| | || ||| | |||||
Sbjct 12607 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGTTTGAGAGGAGG 12561
>seq54467
Length=1408
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA--TCGA 24889
|||||||| |||||||| | || ||||| || || || ||| | | || ||| | |
Sbjct 986 ATGCAGATCTTTGTTAAGATATTGACCGGGAAGACAATCACCCTAGCGGTAGAAAGTTAA 1045
Query 24890 GC-GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
| | || || | | ||| |||| ||| ||| | |||||||| | || | ||
Sbjct 1046 GATGCCACTG---ATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATTCCAGAGCAC 1102
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
|| ||||||||||| | ||| |||||||| || || ||| | |||| | ||||||
Sbjct 1103 CAACAACGTTTAATTTTTGCTGGCAAACAGCTTGAGGATGGTAGGACTCTTGCTGATTAC 1162
Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
| ||| ||||||||| ||| || ||||| ||| | | ||| | |||||
Sbjct 1163 AACATCCAGAAAGAGTCCAACCTCCATTTGGTGCTCCAGTTGAGAGGAGG 1212
>seq31566
Length=6582
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA--TCGA 24889
|||||||| |||||||| | || ||||| || || || ||| | | || ||| | |
Sbjct 605 ATGCAGATCTTTGTTAAGATATTGACCGGGAAGACAATCACCCTAGCGGTAGAAAGTTAA 546
Query 24890 GC-GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
| | || || | | ||| |||| ||| ||| | |||||||| | || | ||
Sbjct 545 GATGCCACTG---ATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATTCCAGAGCAC 489
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
|| ||||||||||| | ||| |||||||| || || ||| | |||| | ||||||
Sbjct 488 CAACAACGTTTAATTTTTGCTGGCAAACAGCTTGAGGATGGTAGGACTCTTGCTGATTAC 429
Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
| ||| ||||||||| ||| || ||||| ||| | | ||| | |||||
Sbjct 428 AACATCCAGAAAGAGTCCAAACTCCATTTGGTGCTCCAGTTGAGAGGAGG 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417979435834880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |