Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6347 98.7 8e-16 seq54467 87.8 2e-12 seq31566 87.8 2e-12 >seq6347 Length=16439 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || ||||||||||| || || ||| | || || ||| Sbjct 12787 ATGCAGATTTTTGTGAAGACATTAACCGGCAAGACAATCACCCTGGAGGTTGAAAGTTCA 12728 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | || |||| ||| || | |||||||| | || |||||| Sbjct 12727 GACACCATTGATAACGTGAAGGCAAAGATCCAAGACAAAGAAGGGATTCCACCAGACCAG 12668 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || |||||||| | ||| ||||| || || || ||| | |||| | ||||||| Sbjct 12667 CAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAAT 12608 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||| || ||||| ||| | || ||| | ||||| Sbjct 12607 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGTTTGAGAGGAGG 12561 >seq54467 Length=1408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA--TCGA 24889 |||||||| |||||||| | || ||||| || || || ||| | | || ||| | | Sbjct 986 ATGCAGATCTTTGTTAAGATATTGACCGGGAAGACAATCACCCTAGCGGTAGAAAGTTAA 1045 Query 24890 GC-GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 | | || || | | ||| |||| ||| ||| | |||||||| | || | || Sbjct 1046 GATGCCACTG---ATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATTCCAGAGCAC 1102 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||||||||||| | ||| |||||||| || || ||| | |||| | |||||| Sbjct 1103 CAACAACGTTTAATTTTTGCTGGCAAACAGCTTGAGGATGGTAGGACTCTTGCTGATTAC 1162 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| ||||||||| ||| || ||||| ||| | | ||| | ||||| Sbjct 1163 AACATCCAGAAAGAGTCCAACCTCCATTTGGTGCTCCAGTTGAGAGGAGG 1212 >seq31566 Length=6582 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA--TCGA 24889 |||||||| |||||||| | || ||||| || || || ||| | | || ||| | | Sbjct 605 ATGCAGATCTTTGTTAAGATATTGACCGGGAAGACAATCACCCTAGCGGTAGAAAGTTAA 546 Query 24890 GC-GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 | | || || | | ||| |||| ||| ||| | |||||||| | || | || Sbjct 545 GATGCCACTG---ATAATGTGAAGGCAAAGATTCAAGACAAAGAAGGAATTCCAGAGCAC 489 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||||||||||| | ||| |||||||| || || ||| | |||| | |||||| Sbjct 488 CAACAACGTTTAATTTTTGCTGGCAAACAGCTTGAGGATGGTAGGACTCTTGCTGATTAC 429 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| ||||||||| ||| || ||||| ||| | | ||| | ||||| Sbjct 428 AACATCCAGAAAGAGTCCAAACTCCATTTGGTGCTCCAGTTGAGAGGAGG 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417979435834880