Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16715 109 5e-19 seq6347 105 6e-18 seq6200 100 3e-16 seq24164 95.1 1e-14 seq25243 91.5 1e-13 >seq16715 Length=90750 Score = 109 bits (120), Expect = 5e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| ||| Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | || ||| | |||||| || || | || || || || Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCA-GGACAAAGAGGGTATCCCACCAGATCA 65661 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATA 31370 ||| | | || || |||||||| ||||||||||| | ||| || || |||||| | Sbjct 65660 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACA 65602 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || |||||||| |||||||| || | || || ||||| |||| Sbjct 65601 ATATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 65551 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || |||| ||||| || || ||| |||| || ||| || Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||| || ||| | || || |||||| Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || ||||||||||| | ||| || |||||| || Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| |||||||| || | || || ||||| |||| Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 54111 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||||||||| || || || |||||| | || |||||| ||| Sbjct 66235 ATGCAAATTTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 66176 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || |||| | || | ||| | ||||||||||||| | || || ||||| Sbjct 66175 GACACTATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 66117 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || || || || ||| | || ||| ||| | ||||| || Sbjct 66116 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGGACCCTTGCTGATTACAA 66057 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || || ||||| |||| ||| Sbjct 66056 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 66023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| ||||||| || || |||||| | || |||||| ||| Sbjct 66463 ATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 66404 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 66403 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 66344 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || ||||| ||| | || ||| ||| | ||||| ||| Sbjct 66343 CAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAAC 66284 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||| |||| || Sbjct 66283 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 66252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || |||||||||||| | || || ||| || Sbjct 55226 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACGATCACCCTTGAGGTGGAAAGTTCA 55167 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | || || ||||||||| ||| | || || ||||| Sbjct 55166 GACACCATTGACAACGTTAAGGCTAAG-ATCCAGGACAAGGAGGGCATCCCTCCAGACCA 55108 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || ||||| | ||||| ||| | | ||||| || Sbjct 55107 GCAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCACTGATTACAA 55048 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || |||||||| |||| || Sbjct 55047 TATCCAGAAGGAGTCCACTCTTCACTTGGTGCT 55015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || ||||| || || |||||| | || || ||| || Sbjct 55454 ATGCAGATCTTCGTGAAAACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAAAGTTCA 55395 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || |||||||||||| | || || || ||| Sbjct 55394 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 55335 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| |||||| | ||||| | ||| | ||||| ||| Sbjct 55334 CAGAGACTGATCTTTGCTGGGAAACAGCTCGAAGATGGTCGGACCCTCGCTGATTACAAC 55275 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| |||| ||| | || | || |||| Sbjct 55274 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTTCGTCTCCGTGGTGGTA 55226 >seq6347 Length=16439 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||| || || || ||| | || ||||| || Sbjct 13015 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATTACCCTTGAGGTTGAGAGTTCT 12956 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| || ||||||||| | || || |||||| Sbjct 12955 GACACCATTGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 12896 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | | || || ||||| |||||| | || || | |||| | ||| ||||| || Sbjct 12895 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCT-AGCAGATTACAA 12837 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| ||||| ||||| ||| |||| || | || ||||| |||| Sbjct 12836 CATTCAAAAGGAATCAACTCTCCATTTGGTGCTGCGCCTAAGGGGTGGTA 12787 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| | || ||||| || |||||| | || |||||| || Sbjct 12787 ATGCAGATTTTTGTGAAGACATTAACCGGCAAGACAATCACCCTGGAGGTTGAAAGTTCA 12728 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | ||||| ||||| | || || ||||| Sbjct 12727 GACACCATTGATAACGTGAAGGCAAAGA-TCCAAGACAAAGAAGGGATTCCACCAGACCA 12669 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| |||| || |||||||| ||| | || || || |||| | ||||| || Sbjct 12668 GCAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAA 12609 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || ||| |||| || Sbjct 12608 TATCCAGAAAGAGTCCACACTCCATTTGGTGCT 12576 >seq6200 Length=22545 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||||||| | || ||||| | Sbjct 22297 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 22238 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | |||||| | || |||||||||||| | || || ||| Sbjct 22237 TCCGACACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 22178 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || || ||| | || || | ||| | ||| || Sbjct 22177 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 22118 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 22117 AACATCCAGAAGGAGTCAACTCTCCATCTCGTGCT 22083 >seq24164 Length=196930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || |||||||| |||| |||||| || Sbjct 29552 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTCGAAGTTGAATCG 29611 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | |||||| | || ||||||||||| | || || ||| Sbjct 29612 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 29671 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367 |||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| |||| Sbjct 29672 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 29729 Query 31368 ATAACATTCAAAAAG 31382 | |||||||| |||| Sbjct 29730 ACAACATTCAGAAAG 29744 >seq25243 Length=7086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| || |||||| | || || || |||||| | || || || ||||| ||||| ||||| Sbjct 5269 GGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGA 5328 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || || ||||| |||||||| |||||||| ||||||||||| || || Sbjct 5329 AGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCT 5388 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 5389 GAGGCTCAGGGGAGG 5403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445411659098880