Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 109 5e-19
seq6347 105 6e-18
seq6200 100 3e-16
seq24164 95.1 1e-14
seq25243 91.5 1e-13
>seq16715
Length=90750
Score = 109 bits (120), Expect = 5e-19
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| |||
Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | || ||| | |||||| || || | || || || ||
Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCA-GGACAAAGAGGGTATCCCACCAGATCA 65661
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATA 31370
||| | | || || |||||||| ||||||||||| | ||| || || |||||| |
Sbjct 65660 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACA 65602
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || |||||||| |||||||| || | || || ||||| ||||
Sbjct 65601 ATATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 65551
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || |||| ||||| || || ||| |||| || ||| ||
Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || |||||| || ||| | || || ||||||
Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | | || || ||||| || ||||||||||| | ||| || |||||| ||
Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| |||||||| || | || || ||||| ||||
Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 54111
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||||||||| || || || |||||| | || |||||| |||
Sbjct 66235 ATGCAAATTTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 66176
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | || |||| | || | ||| | ||||||||||||| | || || |||||
Sbjct 66175 GACACTATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 66117
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | | || || || || || ||| | || ||| ||| | ||||| ||
Sbjct 66116 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGGACCCTTGCTGATTACAA 66057
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || || || || || ||||| |||| |||
Sbjct 66056 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 66023
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||| ||||||| || || |||||| | || |||||| |||
Sbjct 66463 ATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 66404
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||||||| | || || ||||||
Sbjct 66403 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 66344
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || || || ||||| ||| | || ||| ||| | ||||| |||
Sbjct 66343 CAAAGGCTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAAC 66284
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || ||||| |||| ||
Sbjct 66283 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 66252
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || || |||||||||||| | || || ||| ||
Sbjct 55226 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAAACGATCACCCTTGAGGTGGAAAGTTCA 55167
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | | || || ||||||||| ||| | || || |||||
Sbjct 55166 GACACCATTGACAACGTTAAGGCTAAG-ATCCAGGACAAGGAGGGCATCCCTCCAGACCA 55108
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || || ||||| | ||||| ||| | | ||||| ||
Sbjct 55107 GCAGAGACTGATCTTTGCCGGAAAACAACTTGAAGATGGCCGTACTCTCACTGATTACAA 55048
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || |||||||| |||| ||
Sbjct 55047 TATCCAGAAGGAGTCCACTCTTCACTTGGTGCT 55015
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || ||||| || || |||||| | || || ||| ||
Sbjct 55454 ATGCAGATCTTCGTGAAAACCCTCACAGGAAAGACCATCACCCTTGAGGTGGAAAGTTCA 55395
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | || |||||||||||| | || || || |||
Sbjct 55394 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 55335
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || ||||| |||||| | ||||| | ||| | ||||| |||
Sbjct 55334 CAGAGACTGATCTTTGCTGGGAAACAGCTCGAAGATGGTCGGACCCTCGCTGATTACAAC 55275
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || || ||||| |||| ||| | || | || ||||
Sbjct 55274 ATCCAGAAGGAGTCCACCCTTCACTTGGTCCTTCGTCTCCGTGGTGGTA 55226
>seq6347
Length=16439
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| ||||||| || || || ||| | || ||||| ||
Sbjct 13015 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATTACCCTTGAGGTTGAGAGTTCT 12956
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | ||| || ||||||||| | || || ||||||
Sbjct 12955 GACACCATTGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 12896
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
||| | | || || ||||| |||||| | || || | |||| | ||| ||||| ||
Sbjct 12895 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCT-AGCAGATTACAA 12837
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||| ||||| ||||| ||| |||| || | || ||||| ||||
Sbjct 12836 CATTCAAAAGGAATCAACTCTCCATTTGGTGCTGCGCCTAAGGGGTGGTA 12787
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| | || ||||| || |||||| | || |||||| ||
Sbjct 12787 ATGCAGATTTTTGTGAAGACATTAACCGGCAAGACAATCACCCTGGAGGTTGAAAGTTCA 12728
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || || || ||| | ||||| ||||| | || || |||||
Sbjct 12727 GACACCATTGATAACGTGAAGGCAAAGA-TCCAAGACAAAGAAGGGATTCCACCAGACCA 12669
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| |||| || |||||||| ||| | || || || |||| | ||||| ||
Sbjct 12668 GCAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAA 12609
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || ||||| || || || ||| |||| ||
Sbjct 12608 TATCCAGAAAGAGTCCACACTCCATTTGGTGCT 12576
>seq6200
Length=22545
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || || ||||||||| | || ||||| |
Sbjct 22297 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 22238
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | |||||| | || |||||||||||| | || || |||
Sbjct 22237 TCCGACACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 22178
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||| | || ||||| || || ||| | || || | ||| | ||| ||
Sbjct 22177 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 22118
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || ||||| ||||| || ||
Sbjct 22117 AACATCCAGAAGGAGTCAACTCTCCATCTCGTGCT 22083
>seq24164
Length=196930
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || ||||| || || || |||||||| |||| |||||| ||
Sbjct 29552 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTCGAAGTTGAATCG 29611
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||| | | || | |||||| | || ||||||||||| | || || |||
Sbjct 29612 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 29671
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367
|||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| ||||
Sbjct 29672 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 29729
Query 31368 ATAACATTCAAAAAG 31382
| |||||||| ||||
Sbjct 29730 ACAACATTCAGAAAG 29744
>seq25243
Length=7086
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||| || |||||| | || || || |||||| | || || || ||||| ||||| |||||
Sbjct 5269 GGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGA 5328
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| | || || ||||| |||||||| |||||||| ||||||||||| || ||
Sbjct 5329 AGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCT 5388
Query 31405 TAGACTGAGGGGCGG 31419
|| || ||||| ||
Sbjct 5389 GAGGCTCAGGGGAGG 5403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445411659098880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |