Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6171 138 1e-27 seq11918 102 8e-17 seq12363 84.2 2e-11 >seq6171 Length=36435 Score = 138 bits (152), Expect = 1e-27 Identities = 558/872 (64%), Gaps = 8/872 (1%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| ||||| || | ||||| || | || || ||||||||||| |||| ||| || Sbjct 5257 CTTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCA 5199 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 |||||| | ||| ||||| | ||||| | | || ||| |||| || | | Sbjct 5198 GCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCA 5139 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | |||||||| ||||| |||||||| || | | ||| ||| | |||||| || | | Sbjct 5138 ACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCA 5079 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 || | |||| |||| | || |||||| ||||||| | || ||||| || | Sbjct 5078 GAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAA 5019 Query 11577 TCGACGTTATAACTTCCTTAGATGG--TGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | | | |||| || | | | | | | || | |||| |||||||| Sbjct 5018 TTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGC--AAACACGC 4961 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||||||| || |||||||||||||| |||| ||||| || || |||||||| || Sbjct 4960 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 4901 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || || |||||||| | ||||||||| | | || || ||||| || || Sbjct 4900 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 4841 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 || ||| ||||| || || | | || | | | | | | ||||| Sbjct 4840 TTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCGATCCAACG 4781 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 |||||| | || ||||||| || || || || || || || || || | Sbjct 4780 AAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAATTT 4721 Query 11875 CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 | ||||| | ||| ||| || | || | | ||||| ||||| || ||||| Sbjct 4720 GCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAATG 4661 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||| || || || ||||| || ||||||||| || ||||| | | ||| || || Sbjct 4660 GATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACGTC 4601 Query 11995 -CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 ||| || ||| | || | ||||| || || || || | |||||||| | Sbjct 4600 TTTCAT-GAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAGG 4542 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 | || | ||| | || || | | |||| | |||| || ||||| | | || Sbjct 4541 CAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATTAT 4482 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 | |||| ||| |||||||| || ||||| ||| ||||| | || || ||||||| Sbjct 4481 CAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATTT 4422 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| || | |||||| ||| ||||| ||| Sbjct 4421 CCCAAATCTGTGGATACTGAATTGGGAACATA 4390 >seq11918 Length=25867 Score = 102 bits (112), Expect = 8e-17 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||| | ||| ||||||||||| ||||||| || Sbjct 16585 TTGAGGCCTTGGAGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 16644 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 16645 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGA 16704 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| || || | | || |||||| || Sbjct 16705 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATC--TTTAAG-AG 16761 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 16762 GTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 16819 >seq12363 Length=97601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38386 AAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| | ||||| ||||||| ||||||||| || ||||| | || ||||| |||| Sbjct 63362 AATCAAATTGACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCAT 63303 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | |||||||| | | |||| ||| ||| || | || || || |||||| Sbjct 63302 GAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTGATGGCAGAGTCGATATCATTCT 63243 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 || || || | ||| || ||||| |||||||||||||| ||||||| Sbjct 63242 TATGTATCCCAACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCTA 63195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468151947964160