Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq63531 95.1 1e-14 >seq63531 Length=42858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || |||||||||| ||| |||||| ||| || ||| ||| ||||| || | || Sbjct 31851 TCGACGTGGTTGTCGTAGACGTGGCAGTCGCCACCGGTCCACACGAAGTCGCC-GACCTC 31909 Query 20991 AGGCCCGTGACGTGA-GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||| | | ||||||| | ||||| || ||||| ||||||||| ||||| Sbjct 31910 GAGCCCGGTCTGCGCCGCGATCATGTGGGTCAGCAGCGCGTACGAGGCGATGTTGAACGG 31969 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 ||| |||||| |||||| ||| || ||||||||||||||| || |||| || Sbjct 31970 GACACCGAGGAACATGTCCGCGCTCCGCTGGTACAGCTGGCACGAGAGCTTGCCGTCGTT 32029 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGG 21168 |||| ||||| | || |||| || || | || |||||| || || | || ||| Sbjct 32030 GACGTGGAACTGGAAGAACGCGTGGCACGGGGCCAGCGCCATCTCGGGC-ACCTCGGCGA 32088 Query 21169 GGTTCCACGC 21178 ||||||||| Sbjct 32089 CGTTCCACGC 32098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427444086462720